Strain Fitness in Escherichia coli ECRC98 around JDDGAC_29015

Experiment: WM_Bas31

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_29010 and JDDGAC_29015 are separated by 63 nucleotidesJDDGAC_29015 and JDDGAC_29020 are separated by 44 nucleotidesJDDGAC_29020 and beeE overlap by 55 nucleotides JDDGAC_29010: JDDGAC_29010 - Phage Terminase, at 5,536,277 to 5,537,293 _29010 JDDGAC_29015: JDDGAC_29015 - phage major capsid protein, at 5,537,357 to 5,539,294 _29015 JDDGAC_29020: JDDGAC_29020 - hypothetical protein, at 5,539,339 to 5,539,560 _29020 JDDGAC_29025: beeE - phage portal protein, at 5,539,506 to 5,540,870 beeE Position (kb) 5537 5538 5539 5540Strain fitness (log2 ratio) -2 -1 0 1at 5539.057 kb on + strand, within JDDGAC_29015at 5539.093 kb on + strand, within JDDGAC_29015at 5539.558 kb on + strandat 5539.914 kb on - strand, within beeEat 5539.914 kb on - strand, within beeEat 5540.088 kb on + strand, within beeEat 5540.123 kb on + strand, within beeEat 5540.244 kb on + strand, within beeEat 5540.246 kb on + strand, within beeEat 5540.246 kb on + strand, within beeE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
remove
5,539,057 + JDDGAC_29015 0.88 -1.8
5,539,093 + JDDGAC_29015 0.90 +0.2
5,539,558 + +0.6
5,539,914 - beeE JDDGAC_29025 0.30 +1.1
5,539,914 - beeE JDDGAC_29025 0.30 -0.5
5,540,088 + beeE JDDGAC_29025 0.43 -0.8
5,540,123 + beeE JDDGAC_29025 0.45 +0.0
5,540,244 + beeE JDDGAC_29025 0.54 -0.4
5,540,246 + beeE JDDGAC_29025 0.54 +0.5
5,540,246 + beeE JDDGAC_29025 0.54 -2.0

Or see this region's nucleotide sequence