Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rcnA and rcnR are separated by 120 nucleotides rcnR and JDDGAC_28165 are separated by 109 nucleotides JDDGAC_28165 and JDDGAC_28170 are separated by 9 nucleotides
JDDGAC_28155: rcnA - nickel/cobalt efflux protein RcnA, at 5,396,754 to 5,397,605
rcnA
JDDGAC_28160: rcnR - Ni(II)/Co(II)-binding transcriptional repressor RcnR, at 5,397,726 to 5,397,998
rcnR
JDDGAC_28165: JDDGAC_28165 - Outer membrane protein, at 5,398,108 to 5,398,422
_28165
JDDGAC_28170: JDDGAC_28170 - hypothetical protein, at 5,398,432 to 5,398,779
_28170
Position (kb) 5398
5399 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5397.133 kb on + strand, within rcnA at 5397.249 kb on - strand, within rcnA at 5397.458 kb on + strand, within rcnA at 5397.458 kb on + strand, within rcnA at 5397.540 kb on + strand at 5397.624 kb on + strand at 5397.684 kb on + strand at 5397.988 kb on - strand at 5398.010 kb on - strand at 5398.029 kb on + strand at 5398.101 kb on - strand at 5398.101 kb on - strand at 5398.187 kb on - strand, within JDDGAC_28165 at 5398.220 kb on - strand, within JDDGAC_28165 at 5398.242 kb on + strand, within JDDGAC_28165 at 5398.242 kb on + strand, within JDDGAC_28165 at 5398.243 kb on - strand, within JDDGAC_28165 at 5398.243 kb on - strand, within JDDGAC_28165 at 5398.284 kb on - strand, within JDDGAC_28165 at 5398.323 kb on + strand, within JDDGAC_28165 at 5398.323 kb on + strand, within JDDGAC_28165 at 5398.324 kb on - strand, within JDDGAC_28165 at 5398.460 kb on + strand at 5398.460 kb on + strand at 5398.460 kb on + strand at 5398.460 kb on + strand at 5398.496 kb on - strand, within JDDGAC_28170 at 5398.559 kb on + strand, within JDDGAC_28170 at 5398.560 kb on - strand, within JDDGAC_28170 at 5398.560 kb on - strand, within JDDGAC_28170 at 5398.560 kb on - strand, within JDDGAC_28170 at 5398.589 kb on + strand, within JDDGAC_28170 at 5398.734 kb on + strand, within JDDGAC_28170 at 5398.734 kb on + strand, within JDDGAC_28170 at 5398.735 kb on - strand, within JDDGAC_28170 at 5398.745 kb on - strand at 5398.810 kb on - strand at 5398.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 5,397,133 + rcnA JDDGAC_28155 0.44 -0.2 5,397,249 - rcnA JDDGAC_28155 0.58 +1.9 5,397,458 + rcnA JDDGAC_28155 0.83 -0.6 5,397,458 + rcnA JDDGAC_28155 0.83 -1.2 5,397,540 + -0.6 5,397,624 + -0.9 5,397,684 + -0.5 5,397,988 - -0.4 5,398,010 - +0.2 5,398,029 + +1.4 5,398,101 - -0.9 5,398,101 - -2.4 5,398,187 - JDDGAC_28165 0.25 -1.3 5,398,220 - JDDGAC_28165 0.36 -0.1 5,398,242 + JDDGAC_28165 0.43 -0.0 5,398,242 + JDDGAC_28165 0.43 +0.5 5,398,243 - JDDGAC_28165 0.43 +0.1 5,398,243 - JDDGAC_28165 0.43 -1.3 5,398,284 - JDDGAC_28165 0.56 -1.8 5,398,323 + JDDGAC_28165 0.68 -0.2 5,398,323 + JDDGAC_28165 0.68 -0.2 5,398,324 - JDDGAC_28165 0.69 +0.7 5,398,460 + -0.6 5,398,460 + -0.6 5,398,460 + +0.5 5,398,460 + +0.2 5,398,496 - JDDGAC_28170 0.18 -0.4 5,398,559 + JDDGAC_28170 0.36 +1.2 5,398,560 - JDDGAC_28170 0.37 +0.2 5,398,560 - JDDGAC_28170 0.37 +2.4 5,398,560 - JDDGAC_28170 0.37 -1.1 5,398,589 + JDDGAC_28170 0.45 +0.3 5,398,734 + JDDGAC_28170 0.87 -0.1 5,398,734 + JDDGAC_28170 0.87 -0.6 5,398,735 - JDDGAC_28170 0.87 +0.4 5,398,745 - +0.5 5,398,810 - -0.2 5,398,838 - +1.5
Or see this region's nucleotide sequence