Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dedD and cvpA are separated by 531 nucleotides cvpA and purF are separated by 36 nucleotides
JDDGAC_26650: dedD - cell division protein DedD, at 5,104,143 to 5,104,805
dedD
JDDGAC_26670: cvpA - colicin V production protein, at 5,105,337 to 5,105,825
cvpA
JDDGAC_26675: purF - amidophosphoribosyltransferase, at 5,105,862 to 5,107,379
purF
Position (kb) 5105
5106 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 5104.409 kb on + strand, within dedD at 5104.565 kb on + strand, within dedD at 5104.572 kb on + strand, within dedD at 5104.572 kb on + strand, within dedD at 5104.572 kb on + strand, within dedD at 5104.573 kb on - strand, within dedD at 5104.656 kb on + strand, within dedD at 5104.658 kb on + strand, within dedD at 5104.658 kb on + strand, within dedD at 5104.658 kb on + strand, within dedD at 5104.658 kb on + strand, within dedD at 5104.727 kb on + strand, within dedD at 5104.728 kb on - strand, within dedD at 5104.792 kb on - strand at 5104.793 kb on + strand at 5104.939 kb on + strand at 5105.030 kb on + strand at 5105.113 kb on - strand at 5105.336 kb on + strand at 5105.336 kb on + strand at 5105.337 kb on - strand at 5105.352 kb on + strand at 5105.352 kb on + strand at 5105.353 kb on - strand at 5105.469 kb on + strand, within cvpA at 5105.470 kb on - strand, within cvpA at 5105.475 kb on + strand, within cvpA at 5105.475 kb on + strand, within cvpA at 5105.475 kb on + strand, within cvpA at 5105.476 kb on - strand, within cvpA at 5105.587 kb on + strand, within cvpA at 5105.588 kb on - strand, within cvpA at 5105.787 kb on + strand at 5105.788 kb on - strand at 5105.971 kb on + strand at 5105.971 kb on + strand at 5105.971 kb on + strand at 5105.972 kb on - strand at 5105.972 kb on - strand at 5105.972 kb on - strand at 5105.972 kb on - strand at 5105.981 kb on + strand at 5106.026 kb on - strand, within purF at 5106.041 kb on + strand, within purF at 5106.041 kb on + strand, within purF at 5106.134 kb on + strand, within purF at 5106.153 kb on - strand, within purF at 5106.260 kb on + strand, within purF at 5106.396 kb on - strand, within purF at 5106.474 kb on + strand, within purF at 5106.474 kb on + strand, within purF at 5106.475 kb on - strand, within purF at 5106.476 kb on + strand, within purF at 5106.506 kb on + strand, within purF at 5106.555 kb on + strand, within purF at 5106.581 kb on + strand, within purF at 5106.630 kb on + strand, within purF at 5106.631 kb on - strand, within purF at 5106.631 kb on - strand, within purF at 5106.634 kb on + strand, within purF at 5106.634 kb on + strand, within purF at 5106.635 kb on - strand, within purF at 5106.636 kb on + strand, within purF at 5106.636 kb on + strand, within purF at 5106.636 kb on + strand, within purF at 5106.637 kb on - strand, within purF at 5106.637 kb on - strand, within purF at 5106.637 kb on - strand, within purF at 5106.637 kb on - strand, within purF at 5106.807 kb on - strand, within purF at 5106.807 kb on - strand, within purF
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 5,104,409 + dedD JDDGAC_26650 0.40 -0.6 5,104,565 + dedD JDDGAC_26650 0.64 +2.1 5,104,572 + dedD JDDGAC_26650 0.65 -0.5 5,104,572 + dedD JDDGAC_26650 0.65 +0.5 5,104,572 + dedD JDDGAC_26650 0.65 -0.8 5,104,573 - dedD JDDGAC_26650 0.65 -0.2 5,104,656 + dedD JDDGAC_26650 0.77 +0.3 5,104,658 + dedD JDDGAC_26650 0.78 -0.8 5,104,658 + dedD JDDGAC_26650 0.78 +1.7 5,104,658 + dedD JDDGAC_26650 0.78 -0.3 5,104,658 + dedD JDDGAC_26650 0.78 -0.3 5,104,727 + dedD JDDGAC_26650 0.88 +0.4 5,104,728 - dedD JDDGAC_26650 0.88 -0.2 5,104,792 - +0.2 5,104,793 + +0.8 5,104,939 + +0.3 5,105,030 + -1.0 5,105,113 - +0.6 5,105,336 + -0.5 5,105,336 + -0.8 5,105,337 - -2.3 5,105,352 + +0.4 5,105,352 + -1.2 5,105,353 - -2.2 5,105,469 + cvpA JDDGAC_26670 0.27 -2.4 5,105,470 - cvpA JDDGAC_26670 0.27 -0.5 5,105,475 + cvpA JDDGAC_26670 0.28 -0.6 5,105,475 + cvpA JDDGAC_26670 0.28 -1.0 5,105,475 + cvpA JDDGAC_26670 0.28 -1.3 5,105,476 - cvpA JDDGAC_26670 0.28 -2.9 5,105,587 + cvpA JDDGAC_26670 0.51 -5.2 5,105,588 - cvpA JDDGAC_26670 0.51 -4.0 5,105,787 + -2.3 5,105,788 - -1.9 5,105,971 + -2.8 5,105,971 + -6.1 5,105,971 + -4.6 5,105,972 - -2.7 5,105,972 - -2.3 5,105,972 - -4.6 5,105,972 - -1.4 5,105,981 + -4.9 5,106,026 - purF JDDGAC_26675 0.11 -0.9 5,106,041 + purF JDDGAC_26675 0.12 -4.1 5,106,041 + purF JDDGAC_26675 0.12 -0.5 5,106,134 + purF JDDGAC_26675 0.18 -3.3 5,106,153 - purF JDDGAC_26675 0.19 -4.6 5,106,260 + purF JDDGAC_26675 0.26 -2.1 5,106,396 - purF JDDGAC_26675 0.35 -3.8 5,106,474 + purF JDDGAC_26675 0.40 -4.2 5,106,474 + purF JDDGAC_26675 0.40 -4.2 5,106,475 - purF JDDGAC_26675 0.40 -3.2 5,106,476 + purF JDDGAC_26675 0.40 -3.9 5,106,506 + purF JDDGAC_26675 0.42 -3.0 5,106,555 + purF JDDGAC_26675 0.46 -3.2 5,106,581 + purF JDDGAC_26675 0.47 -4.3 5,106,630 + purF JDDGAC_26675 0.51 -3.9 5,106,631 - purF JDDGAC_26675 0.51 -1.9 5,106,631 - purF JDDGAC_26675 0.51 -5.7 5,106,634 + purF JDDGAC_26675 0.51 -2.3 5,106,634 + purF JDDGAC_26675 0.51 -1.2 5,106,635 - purF JDDGAC_26675 0.51 -4.3 5,106,636 + purF JDDGAC_26675 0.51 -4.1 5,106,636 + purF JDDGAC_26675 0.51 -4.0 5,106,636 + purF JDDGAC_26675 0.51 -0.5 5,106,637 - purF JDDGAC_26675 0.51 -2.6 5,106,637 - purF JDDGAC_26675 0.51 -1.6 5,106,637 - purF JDDGAC_26675 0.51 -5.2 5,106,637 - purF JDDGAC_26675 0.51 -6.8 5,106,807 - purF JDDGAC_26675 0.62 -0.8 5,106,807 - purF JDDGAC_26675 0.62 -5.4
Or see this region's nucleotide sequence