Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alaC and ypdK are separated by 64 nucleotides ypdK and lpxP are separated by 370 nucleotides
JDDGAC_26335: alaC - alanine transaminase, at 5,035,748 to 5,036,986
alaC
JDDGAC_26340: ypdK - membrane protein YpdK, at 5,037,051 to 5,037,107
ypdK
JDDGAC_26345: lpxP - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 5,037,478 to 5,038,398
lpxP
Position (kb) 5037
5038 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5036.141 kb on + strand, within alaC at 5036.152 kb on + strand, within alaC at 5036.152 kb on + strand, within alaC at 5036.152 kb on + strand, within alaC at 5036.156 kb on + strand, within alaC at 5036.156 kb on + strand, within alaC at 5036.157 kb on - strand, within alaC at 5036.184 kb on + strand, within alaC at 5036.185 kb on - strand, within alaC at 5036.253 kb on - strand, within alaC at 5036.354 kb on + strand, within alaC at 5036.355 kb on - strand, within alaC at 5036.384 kb on + strand, within alaC at 5036.385 kb on - strand, within alaC at 5036.467 kb on + strand, within alaC at 5036.468 kb on - strand, within alaC at 5036.484 kb on - strand, within alaC at 5036.655 kb on - strand, within alaC at 5036.673 kb on + strand, within alaC at 5036.681 kb on - strand, within alaC at 5036.732 kb on + strand, within alaC at 5036.732 kb on + strand, within alaC at 5036.732 kb on + strand, within alaC at 5036.733 kb on - strand, within alaC at 5036.733 kb on - strand, within alaC at 5036.733 kb on - strand, within alaC at 5036.759 kb on + strand, within alaC at 5036.965 kb on + strand at 5036.966 kb on - strand at 5037.053 kb on - strand at 5037.092 kb on + strand, within ypdK at 5037.177 kb on + strand at 5037.178 kb on - strand at 5037.587 kb on + strand, within lpxP at 5037.722 kb on + strand, within lpxP at 5037.722 kb on + strand, within lpxP at 5037.722 kb on + strand, within lpxP at 5037.722 kb on + strand, within lpxP at 5037.723 kb on - strand, within lpxP at 5037.883 kb on - strand, within lpxP at 5037.941 kb on + strand, within lpxP at 5038.000 kb on - strand, within lpxP at 5038.000 kb on - strand, within lpxP at 5038.022 kb on - strand, within lpxP at 5038.084 kb on - strand, within lpxP at 5038.084 kb on - strand, within lpxP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 5,036,141 + alaC JDDGAC_26335 0.32 -0.3 5,036,152 + alaC JDDGAC_26335 0.33 +1.0 5,036,152 + alaC JDDGAC_26335 0.33 +0.2 5,036,152 + alaC JDDGAC_26335 0.33 +0.5 5,036,156 + alaC JDDGAC_26335 0.33 -1.1 5,036,156 + alaC JDDGAC_26335 0.33 -0.4 5,036,157 - alaC JDDGAC_26335 0.33 +0.1 5,036,184 + alaC JDDGAC_26335 0.35 +0.8 5,036,185 - alaC JDDGAC_26335 0.35 +0.2 5,036,253 - alaC JDDGAC_26335 0.41 -0.2 5,036,354 + alaC JDDGAC_26335 0.49 -0.2 5,036,355 - alaC JDDGAC_26335 0.49 +0.6 5,036,384 + alaC JDDGAC_26335 0.51 -0.5 5,036,385 - alaC JDDGAC_26335 0.51 +2.1 5,036,467 + alaC JDDGAC_26335 0.58 +1.0 5,036,468 - alaC JDDGAC_26335 0.58 -1.2 5,036,484 - alaC JDDGAC_26335 0.59 -0.3 5,036,655 - alaC JDDGAC_26335 0.73 -2.0 5,036,673 + alaC JDDGAC_26335 0.75 +1.5 5,036,681 - alaC JDDGAC_26335 0.75 +0.8 5,036,732 + alaC JDDGAC_26335 0.79 -2.0 5,036,732 + alaC JDDGAC_26335 0.79 -0.0 5,036,732 + alaC JDDGAC_26335 0.79 -1.9 5,036,733 - alaC JDDGAC_26335 0.79 -0.5 5,036,733 - alaC JDDGAC_26335 0.79 +0.6 5,036,733 - alaC JDDGAC_26335 0.79 +0.4 5,036,759 + alaC JDDGAC_26335 0.82 -0.3 5,036,965 + +0.4 5,036,966 - +1.6 5,037,053 - +0.2 5,037,092 + ypdK JDDGAC_26340 0.72 +1.2 5,037,177 + -0.1 5,037,178 - -0.2 5,037,587 + lpxP JDDGAC_26345 0.12 -1.0 5,037,722 + lpxP JDDGAC_26345 0.26 +0.1 5,037,722 + lpxP JDDGAC_26345 0.26 -0.6 5,037,722 + lpxP JDDGAC_26345 0.26 -2.5 5,037,722 + lpxP JDDGAC_26345 0.26 +0.5 5,037,723 - lpxP JDDGAC_26345 0.27 -0.1 5,037,883 - lpxP JDDGAC_26345 0.44 -1.6 5,037,941 + lpxP JDDGAC_26345 0.50 +0.2 5,038,000 - lpxP JDDGAC_26345 0.57 -0.0 5,038,000 - lpxP JDDGAC_26345 0.57 +0.1 5,038,022 - lpxP JDDGAC_26345 0.59 -0.0 5,038,084 - lpxP JDDGAC_26345 0.66 +0.7 5,038,084 - lpxP JDDGAC_26345 0.66 -0.0
Or see this region's nucleotide sequence