Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoE and rseA are separated by 32 nucleotides rseA and rseB overlap by 1 nucleotides rseB and rseC overlap by 4 nucleotides
JDDGAC_25040: rpoE - RNA polymerase sigma factor RpoE, at 4,789,042 to 4,789,617
rpoE
JDDGAC_25045: rseA - anti-sigma-E factor RseA, at 4,789,650 to 4,790,288
rseA
JDDGAC_25050: rseB - sigma-E factor regulatory protein RseB, at 4,790,288 to 4,791,244
rseB
JDDGAC_25060: rseC - SoxR-reducing system protein RseC, at 4,791,241 to 4,791,720
rseC
Position (kb) 4789
4790
4791 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4788.673 kb on + strand at 4788.674 kb on - strand at 4788.674 kb on - strand at 4788.692 kb on + strand at 4788.692 kb on + strand at 4788.692 kb on + strand at 4788.692 kb on + strand at 4788.693 kb on - strand at 4788.693 kb on - strand at 4788.796 kb on - strand at 4788.876 kb on + strand at 4788.877 kb on - strand at 4788.877 kb on - strand at 4788.878 kb on + strand at 4788.879 kb on - strand at 4788.884 kb on + strand at 4788.885 kb on - strand at 4788.888 kb on + strand at 4788.888 kb on + strand at 4789.645 kb on + strand at 4789.724 kb on + strand, within rseA at 4790.010 kb on + strand, within rseA at 4790.012 kb on + strand, within rseA at 4790.057 kb on + strand, within rseA at 4790.057 kb on + strand, within rseA at 4790.058 kb on - strand, within rseA at 4790.060 kb on + strand, within rseA at 4790.104 kb on + strand, within rseA at 4790.156 kb on + strand, within rseA at 4790.269 kb on + strand at 4790.326 kb on + strand at 4790.326 kb on + strand at 4790.326 kb on + strand at 4790.593 kb on + strand, within rseB at 4790.594 kb on - strand, within rseB at 4790.604 kb on - strand, within rseB at 4790.633 kb on + strand, within rseB at 4790.634 kb on - strand, within rseB at 4790.634 kb on - strand, within rseB at 4790.661 kb on - strand, within rseB at 4790.663 kb on + strand, within rseB at 4790.663 kb on + strand, within rseB at 4790.664 kb on - strand, within rseB at 4790.672 kb on - strand, within rseB at 4790.692 kb on + strand, within rseB at 4790.747 kb on + strand, within rseB at 4790.753 kb on + strand, within rseB at 4790.753 kb on + strand, within rseB at 4790.754 kb on - strand, within rseB at 4790.754 kb on - strand, within rseB at 4790.785 kb on - strand, within rseB at 4790.851 kb on + strand, within rseB at 4790.878 kb on + strand, within rseB at 4790.878 kb on + strand, within rseB at 4790.878 kb on + strand, within rseB at 4790.879 kb on - strand, within rseB at 4790.928 kb on + strand, within rseB at 4791.150 kb on + strand at 4791.151 kb on - strand at 4791.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 4,788,673 + +0.1 4,788,674 - +0.1 4,788,674 - -0.2 4,788,692 + +0.4 4,788,692 + +0.9 4,788,692 + -1.2 4,788,692 + +1.2 4,788,693 - -0.5 4,788,693 - -1.3 4,788,796 - +0.3 4,788,876 + +1.2 4,788,877 - -0.3 4,788,877 - +0.7 4,788,878 + +1.0 4,788,879 - -0.3 4,788,884 + +1.2 4,788,885 - +0.6 4,788,888 + +0.6 4,788,888 + -0.7 4,789,645 + -1.9 4,789,724 + rseA JDDGAC_25045 0.12 -1.0 4,790,010 + rseA JDDGAC_25045 0.56 -4.4 4,790,012 + rseA JDDGAC_25045 0.57 -0.7 4,790,057 + rseA JDDGAC_25045 0.64 -2.1 4,790,057 + rseA JDDGAC_25045 0.64 -1.7 4,790,058 - rseA JDDGAC_25045 0.64 -0.6 4,790,060 + rseA JDDGAC_25045 0.64 -0.9 4,790,104 + rseA JDDGAC_25045 0.71 -2.1 4,790,156 + rseA JDDGAC_25045 0.79 -4.8 4,790,269 + -0.9 4,790,326 + -0.2 4,790,326 + -2.4 4,790,326 + -0.0 4,790,593 + rseB JDDGAC_25050 0.32 +1.5 4,790,594 - rseB JDDGAC_25050 0.32 +0.6 4,790,604 - rseB JDDGAC_25050 0.33 -0.6 4,790,633 + rseB JDDGAC_25050 0.36 -0.7 4,790,634 - rseB JDDGAC_25050 0.36 +1.0 4,790,634 - rseB JDDGAC_25050 0.36 -0.7 4,790,661 - rseB JDDGAC_25050 0.39 -0.1 4,790,663 + rseB JDDGAC_25050 0.39 +0.5 4,790,663 + rseB JDDGAC_25050 0.39 -0.2 4,790,664 - rseB JDDGAC_25050 0.39 +0.0 4,790,672 - rseB JDDGAC_25050 0.40 -0.4 4,790,692 + rseB JDDGAC_25050 0.42 -1.3 4,790,747 + rseB JDDGAC_25050 0.48 -1.9 4,790,753 + rseB JDDGAC_25050 0.49 -0.4 4,790,753 + rseB JDDGAC_25050 0.49 +0.2 4,790,754 - rseB JDDGAC_25050 0.49 -0.3 4,790,754 - rseB JDDGAC_25050 0.49 -0.2 4,790,785 - rseB JDDGAC_25050 0.52 +0.3 4,790,851 + rseB JDDGAC_25050 0.59 +0.2 4,790,878 + rseB JDDGAC_25050 0.62 +0.8 4,790,878 + rseB JDDGAC_25050 0.62 -0.3 4,790,878 + rseB JDDGAC_25050 0.62 +0.7 4,790,879 - rseB JDDGAC_25050 0.62 -0.6 4,790,928 + rseB JDDGAC_25050 0.67 +0.9 4,791,150 + +2.4 4,791,151 - -0.0 4,791,221 - -0.0
Or see this region's nucleotide sequence