Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24690

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_24680 and JDDGAC_24685 overlap by 26 nucleotidesJDDGAC_24685 and JDDGAC_24690 overlap by 4 nucleotidesJDDGAC_24690 and JDDGAC_24695 overlap by 4 nucleotidesJDDGAC_24695 and JDDGAC_24700 are separated by 252 nucleotides JDDGAC_24680: JDDGAC_24680 - endonuclease, at 4,730,545 to 4,731,111 _24680 JDDGAC_24685: JDDGAC_24685 - protein NinG, at 4,731,086 to 4,731,697 _24685 JDDGAC_24690: JDDGAC_24690 - Serine/threonine-protein phosphatase, at 4,731,694 to 4,732,359 _24690 JDDGAC_24695: JDDGAC_24695 - Antitermination protein Q, at 4,732,356 to 4,732,979 _24695 JDDGAC_24700: JDDGAC_24700 - Membrane protein, at 4,733,232 to 4,733,975 _24700 Position (kb) 4731 4732 4733Strain fitness (log2 ratio) -2 -1 0 1at 4730.836 kb on - strand, within JDDGAC_24680at 4730.982 kb on + strand, within JDDGAC_24680at 4731.023 kb on + strand, within JDDGAC_24680at 4731.023 kb on + strand, within JDDGAC_24680at 4731.045 kb on + strand, within JDDGAC_24680at 4731.046 kb on - strand, within JDDGAC_24680at 4731.049 kb on + strand, within JDDGAC_24680at 4731.049 kb on + strand, within JDDGAC_24680at 4731.050 kb on - strand, within JDDGAC_24680at 4731.050 kb on - strand, within JDDGAC_24680at 4731.052 kb on + strand, within JDDGAC_24680at 4731.160 kb on + strand, within JDDGAC_24685at 4732.507 kb on + strand, within JDDGAC_24695at 4732.507 kb on + strand, within JDDGAC_24695at 4732.518 kb on - strand, within JDDGAC_24695at 4732.518 kb on - strand, within JDDGAC_24695at 4732.561 kb on - strand, within JDDGAC_24695at 4732.561 kb on - strand, within JDDGAC_24695at 4732.561 kb on - strand, within JDDGAC_24695at 4732.626 kb on - strand, within JDDGAC_24695at 4732.626 kb on - strand, within JDDGAC_24695at 4732.665 kb on + strand, within JDDGAC_24695at 4732.743 kb on - strand, within JDDGAC_24695at 4732.744 kb on + strand, within JDDGAC_24695at 4732.744 kb on + strand, within JDDGAC_24695at 4732.745 kb on - strand, within JDDGAC_24695at 4732.745 kb on - strand, within JDDGAC_24695at 4732.768 kb on + strand, within JDDGAC_24695at 4732.797 kb on - strand, within JDDGAC_24695at 4732.797 kb on - strand, within JDDGAC_24695at 4732.797 kb on - strand, within JDDGAC_24695at 4732.905 kb on + strand, within JDDGAC_24695at 4733.006 kb on + strandat 4733.006 kb on + strandat 4733.010 kb on - strandat 4733.075 kb on - strandat 4733.141 kb on + strandat 4733.144 kb on + strandat 4733.165 kb on - strandat 4733.165 kb on - strandat 4733.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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4,730,836 - JDDGAC_24680 0.51 +0.7
4,730,982 + JDDGAC_24680 0.77 -2.5
4,731,023 + JDDGAC_24680 0.84 +0.3
4,731,023 + JDDGAC_24680 0.84 -0.3
4,731,045 + JDDGAC_24680 0.88 +1.3
4,731,046 - JDDGAC_24680 0.88 -0.2
4,731,049 + JDDGAC_24680 0.89 -0.6
4,731,049 + JDDGAC_24680 0.89 +0.8
4,731,050 - JDDGAC_24680 0.89 +0.4
4,731,050 - JDDGAC_24680 0.89 -1.1
4,731,052 + JDDGAC_24680 0.89 -0.4
4,731,160 + JDDGAC_24685 0.12 +0.3
4,732,507 + JDDGAC_24695 0.24 -0.2
4,732,507 + JDDGAC_24695 0.24 +0.2
4,732,518 - JDDGAC_24695 0.26 +0.7
4,732,518 - JDDGAC_24695 0.26 +0.1
4,732,561 - JDDGAC_24695 0.33 -0.2
4,732,561 - JDDGAC_24695 0.33 +1.3
4,732,561 - JDDGAC_24695 0.33 +0.0
4,732,626 - JDDGAC_24695 0.43 -0.4
4,732,626 - JDDGAC_24695 0.43 -1.7
4,732,665 + JDDGAC_24695 0.50 +0.2
4,732,743 - JDDGAC_24695 0.62 -1.5
4,732,744 + JDDGAC_24695 0.62 +0.1
4,732,744 + JDDGAC_24695 0.62 +0.7
4,732,745 - JDDGAC_24695 0.62 -0.4
4,732,745 - JDDGAC_24695 0.62 +0.1
4,732,768 + JDDGAC_24695 0.66 +0.5
4,732,797 - JDDGAC_24695 0.71 -0.8
4,732,797 - JDDGAC_24695 0.71 +1.1
4,732,797 - JDDGAC_24695 0.71 +0.0
4,732,905 + JDDGAC_24695 0.88 +0.5
4,733,006 + +0.6
4,733,006 + +1.6
4,733,010 - +0.3
4,733,075 - -2.2
4,733,141 + -0.3
4,733,144 + -0.5
4,733,165 - -0.4
4,733,165 - +0.5
4,733,168 - +0.8

Or see this region's nucleotide sequence