Strain Fitness in Escherichia coli ECRC98 around JDDGAC_23550

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_23540 and JDDGAC_23545 are separated by 429 nucleotidesJDDGAC_23545 and yqeL overlap by 25 nucleotidesyqeL and yqeJ are separated by 32 nucleotidesyqeJ and yqeI overlap by 4 nucleotides JDDGAC_23540: JDDGAC_23540 - Putative uncharacterized protein YgeF, at 4,506,757 to 4,507,248 _23540 JDDGAC_23545: JDDGAC_23545 - Uncharacterized protein YqeK, at 4,507,678 to 4,508,103 _23545 JDDGAC_23550: yqeL - Uncharacterized protein YqeL, at 4,508,079 to 4,508,219 yqeL JDDGAC_23555: yqeJ - Uncharacterized protein YqeJ, at 4,508,252 to 4,508,731 yqeJ JDDGAC_23560: yqeI - Uncharacterized protein YqeI, at 4,508,728 to 4,509,537 yqeI Position (kb) 4508 4509Strain fitness (log2 ratio) -2 -1 0 1at 4507.406 kb on - strandat 4507.474 kb on + strandat 4507.520 kb on - strandat 4507.674 kb on + strandat 4507.890 kb on + strand, within JDDGAC_23545at 4508.105 kb on - strand, within yqeLat 4508.105 kb on - strand, within yqeLat 4509.068 kb on - strand, within yqeIat 4509.174 kb on + strand, within yqeIat 4509.197 kb on - strand, within yqeIat 4509.200 kb on - strand, within yqeIat 4509.217 kb on - strand, within yqeIat 4509.217 kb on - strand, within yqeI

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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4,507,406 - +0.7
4,507,474 + +0.7
4,507,520 - +0.3
4,507,674 + -0.8
4,507,890 + JDDGAC_23545 0.50 +0.8
4,508,105 - yqeL JDDGAC_23550 0.18 -0.3
4,508,105 - yqeL JDDGAC_23550 0.18 -1.7
4,509,068 - yqeI JDDGAC_23560 0.42 -0.5
4,509,174 + yqeI JDDGAC_23560 0.55 +0.1
4,509,197 - yqeI JDDGAC_23560 0.58 +0.1
4,509,200 - yqeI JDDGAC_23560 0.58 +0.5
4,509,217 - yqeI JDDGAC_23560 0.60 +1.4
4,509,217 - yqeI JDDGAC_23560 0.60 -2.1

Or see this region's nucleotide sequence