Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_23410 and JDDGAC_23415 overlap by 23 nucleotides JDDGAC_23415 and JDDGAC_23420 are separated by 72 nucleotides JDDGAC_23420 and fliN overlap by 41 nucleotides fliN and escR overlap by 11 nucleotides escR and JDDGAC_23435 are separated by 10 nucleotides JDDGAC_23435 and sctT are separated by 1 nucleotides
JDDGAC_23410: JDDGAC_23410 - type III secretion protein, at 4,490,074 to 4,490,532
_23410
JDDGAC_23415: JDDGAC_23415 - Type III secretion protein, at 4,490,510 to 4,490,743
_23415
JDDGAC_23420: JDDGAC_23420 - type III secretion protein, at 4,490,816 to 4,491,385
_23420
JDDGAC_23425: fliN - YscQ/HrcQ family type III secretion apparatus protein, at 4,491,345 to 4,492,331
fliN
JDDGAC_23430: escR - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 4,492,321 to 4,492,986
escR
JDDGAC_23435: JDDGAC_23435 - EscS/YscS/HrcS family type III secretion system export apparatus protein, at 4,492,997 to 4,493,257
_23435
JDDGAC_23440: sctT - type III secretion system export apparatus subunit SctT, at 4,493,259 to 4,493,711
sctT
Position (kb) 4491
4492
4493 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4491.173 kb on - strand, within JDDGAC_23420 at 4491.193 kb on + strand, within JDDGAC_23420 at 4491.268 kb on + strand, within JDDGAC_23420 at 4491.776 kb on + strand, within fliN at 4492.656 kb on + strand, within escR at 4492.853 kb on + strand, within escR at 4492.884 kb on - strand, within escR at 4492.955 kb on + strand at 4493.024 kb on - strand, within JDDGAC_23435 at 4493.043 kb on + strand, within JDDGAC_23435 at 4493.272 kb on + strand at 4493.289 kb on - strand at 4493.293 kb on + strand at 4493.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 4,491,173 - JDDGAC_23420 0.63 -0.0 4,491,193 + JDDGAC_23420 0.66 -1.7 4,491,268 + JDDGAC_23420 0.79 -3.8 4,491,776 + fliN JDDGAC_23425 0.44 -1.6 4,492,656 + escR JDDGAC_23430 0.50 -3.3 4,492,853 + escR JDDGAC_23430 0.80 +0.9 4,492,884 - escR JDDGAC_23430 0.85 -1.3 4,492,955 + -0.8 4,493,024 - JDDGAC_23435 0.10 +0.0 4,493,043 + JDDGAC_23435 0.18 +1.0 4,493,272 + +0.6 4,493,289 - -1.5 4,493,293 + -0.4 4,493,304 - +0.3
Or see this region's nucleotide sequence