Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20105

Experiment: WM_Bas31

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas31
3,855,713	+	rbbA	JDDGAC_20100	0.64	+0.7
3,855,713	+	rbbA	JDDGAC_20100	0.64	-0.0
3,855,714	-	rbbA	JDDGAC_20100	0.64	-0.0
3,855,767	+	rbbA	JDDGAC_20100	0.66	-0.2
3,855,923	+	rbbA	JDDGAC_20100	0.71	+1.3
3,855,983	-	rbbA	JDDGAC_20100	0.73	+0.3
3,856,073	+	rbbA	JDDGAC_20100	0.77	-0.1
3,856,094	+	rbbA	JDDGAC_20100	0.77	+0.3
3,856,095	-	rbbA	JDDGAC_20100	0.78	+0.1
3,856,105	+	rbbA	JDDGAC_20100	0.78	-2.9
3,856,105	+	rbbA	JDDGAC_20100	0.78	-0.0
3,856,171	+	rbbA	JDDGAC_20100	0.80	+0.0
3,856,204	+	rbbA	JDDGAC_20100	0.82	-0.4
3,856,205	-	rbbA	JDDGAC_20100	0.82	-1.2
3,856,275	+	rbbA	JDDGAC_20100	0.84	+0.8
3,856,386	+	rbbA	JDDGAC_20100	0.88	+1.0
3,856,386	+	rbbA	JDDGAC_20100	0.88	+0.1
3,856,386	+	rbbA	JDDGAC_20100	0.88	+0.3
3,856,386	+	rbbA	JDDGAC_20100	0.88	+0.2
3,856,387	-	rbbA	JDDGAC_20100	0.88	+1.1
3,856,387	-	rbbA	JDDGAC_20100	0.88	-1.4
3,856,387	-	rbbA	JDDGAC_20100	0.88	+0.3
3,856,387	-	rbbA	JDDGAC_20100	0.88	+0.5
3,856,387	-	rbbA	JDDGAC_20100	0.88	-0.1
3,856,387	-	rbbA	JDDGAC_20100	0.88	+0.1
3,856,388	+	rbbA	JDDGAC_20100	0.88	-0.8
3,856,389	-	rbbA	JDDGAC_20100	0.88	+0.1
3,856,431	-	rbbA	JDDGAC_20100	0.90	+0.1
3,856,469	+				-0.9
3,856,558	-				-0.7
3,856,675	+				+0.4
3,856,675	+				-0.0
3,856,772	-				+0.4
3,856,920	-	yadH	JDDGAC_20105	0.19	-1.3
3,856,920	-	yadH	JDDGAC_20105	0.19	-1.2
3,857,111	+	yadH	JDDGAC_20105	0.36	-0.8
3,857,112	-	yadH	JDDGAC_20105	0.36	+0.5
3,857,112	-	yadH	JDDGAC_20105	0.36	-0.1
3,857,112	-	yadH	JDDGAC_20105	0.36	-0.3
3,857,112	-	yadH	JDDGAC_20105	0.36	+0.1
3,857,113	+	yadH	JDDGAC_20105	0.36	+0.3
3,857,122	+	yadH	JDDGAC_20105	0.37	-0.6
3,857,122	+	yadH	JDDGAC_20105	0.37	+0.3
3,857,125	+	yadH	JDDGAC_20105	0.37	-0.2
3,857,126	-	yadH	JDDGAC_20105	0.37	+0.9
3,857,283	+	yadH	JDDGAC_20105	0.51	+0.7
3,857,284	-	yadH	JDDGAC_20105	0.51	+1.0
3,857,337	+	yadH	JDDGAC_20105	0.56	+1.3
3,857,337	+	yadH	JDDGAC_20105	0.56	-0.4
3,857,338	-	yadH	JDDGAC_20105	0.56	+0.5
3,857,439	+	yadH	JDDGAC_20105	0.65	-0.7
3,857,439	+	yadH	JDDGAC_20105	0.65	-0.9
3,857,440	-	yadH	JDDGAC_20105	0.65	+0.3
3,857,485	+	yadH	JDDGAC_20105	0.69	-0.0
3,857,485	+	yadH	JDDGAC_20105	0.69	-0.3
3,857,504	-	yadH	JDDGAC_20105	0.71	-0.8
3,857,504	-	yadH	JDDGAC_20105	0.71	+0.3
3,857,548	-	yadH	JDDGAC_20105	0.75	+0.7
3,857,662	+	yadH	JDDGAC_20105	0.85	+0.1
3,857,947	+		JDDGAC_20110	0.15	-0.6
3,858,003	+		JDDGAC_20110	0.35	+0.3
3,858,004	-		JDDGAC_20110	0.36	+0.2
3,858,038	-		JDDGAC_20110	0.48	+1.0
3,858,061	+		JDDGAC_20110	0.56	-0.6
3,858,072	+		JDDGAC_20110	0.60	-0.5
3,858,072	+		JDDGAC_20110	0.60	+0.1
3,858,072	+		JDDGAC_20110	0.60	-0.1
3,858,073	-		JDDGAC_20110	0.61	-0.5
3,858,076	+		JDDGAC_20110	0.62	-0.2
3,858,076	+		JDDGAC_20110	0.62	-1.7
3,858,077	-		JDDGAC_20110	0.62	-0.3
3,858,119	-		JDDGAC_20110	0.77	-1.9
3,858,159	+				+3.0
3,858,159	+				-0.5
3,858,159	+				+0.4
3,858,159	+				+0.6
3,858,159	+				+0.8
3,858,159	+				+0.4
3,858,159	+				-0.7
3,858,159	+				+1.7
3,858,160	-				+0.5
3,858,160	-				+0.6
3,858,160	-				+0.2
3,858,163	+				+0.5
3,858,163	+				+0.8
3,858,163	+				-0.6
3,858,164	-				-0.0
3,858,164	-				+0.8
3,858,164	-				+0.2
3,858,164	-				-0.5
3,858,165	+				+0.3
3,858,166	-				-3.4
3,858,369	+	hicB	JDDGAC_20115	0.53	+1.9
3,858,369	+	hicB	JDDGAC_20115	0.53	-0.5
3,858,370	-	hicB	JDDGAC_20115	0.53	+0.5
3,858,426	-	hicB	JDDGAC_20115	0.69	+0.1
3,858,492	+	hicB	JDDGAC_20115	0.87	-2.5
3,858,496	+	hicB	JDDGAC_20115	0.88	+0.0
3,858,496	+	hicB	JDDGAC_20115	0.88	-2.2
3,858,535	+				-0.1
3,858,535	+				-1.1
3,858,536	-				-1.1
3,858,542	+				-0.4
3,858,588	+				+0.2
3,858,589	-				-0.2
3,858,641	-				-0.9
3,858,642	+				-0.1
3,858,642	+				-1.6
3,858,643	-				+0.2
3,858,767	-	fba	JDDGAC_20120	0.21	+0.2
3,858,771	-	fba	JDDGAC_20120	0.21	+2.0
3,858,786	+	fba	JDDGAC_20120	0.23	+2.4
3,858,803	+	fba	JDDGAC_20120	0.25	+0.5