Strain Fitness in Escherichia coli ECRC98 around JDDGAC_17240

Experiment: WM_Bas31

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas31
3,262,976	+	yijO	JDDGAC_17230	0.23	+1.0
3,262,976	+	yijO	JDDGAC_17230	0.23	+0.5
3,262,977	-	yijO	JDDGAC_17230	0.23	+0.9
3,263,023	+	yijO	JDDGAC_17230	0.29	+0.2
3,263,023	+	yijO	JDDGAC_17230	0.29	-0.6
3,263,024	-	yijO	JDDGAC_17230	0.29	+0.5
3,263,024	-	yijO	JDDGAC_17230	0.29	+0.3
3,263,024	-	yijO	JDDGAC_17230	0.29	-0.0
3,263,026	+	yijO	JDDGAC_17230	0.29	-0.1
3,263,094	-	yijO	JDDGAC_17230	0.37	+0.4
3,263,139	+	yijO	JDDGAC_17230	0.42	+0.2
3,263,139	+	yijO	JDDGAC_17230	0.42	+0.6
3,263,140	-	yijO	JDDGAC_17230	0.42	+0.2
3,263,155	-	yijO	JDDGAC_17230	0.44	+0.7
3,263,287	-	yijO	JDDGAC_17230	0.60	+1.8
3,263,297	-	yijO	JDDGAC_17230	0.61	+1.0
3,263,306	+	yijO	JDDGAC_17230	0.62	+0.1
3,263,308	+	yijO	JDDGAC_17230	0.62	-1.5
3,263,309	-	yijO	JDDGAC_17230	0.62	-0.8
3,263,363	+	yijO	JDDGAC_17230	0.69	+0.3
3,263,364	-	yijO	JDDGAC_17230	0.69	+0.1
3,263,365	+	yijO	JDDGAC_17230	0.69	-0.2
3,263,366	-	yijO	JDDGAC_17230	0.69	-0.6
3,263,366	-	yijO	JDDGAC_17230	0.69	-1.3
3,263,366	-	yijO	JDDGAC_17230	0.69	+1.3
3,263,366	-	yijO	JDDGAC_17230	0.69	+0.4
3,263,366	-	yijO	JDDGAC_17230	0.69	+0.7
3,263,378	+	yijO	JDDGAC_17230	0.70	-0.1
3,263,379	-	yijO	JDDGAC_17230	0.71	+0.2
3,263,379	-	yijO	JDDGAC_17230	0.71	+0.6
3,263,420	-	yijO	JDDGAC_17230	0.75	+0.2
3,263,426	+	yijO	JDDGAC_17230	0.76	-0.0
3,263,427	-	yijO	JDDGAC_17230	0.76	+0.2
3,263,456	-	yijO	JDDGAC_17230	0.80	-0.2
3,263,456	-	yijO	JDDGAC_17230	0.80	-0.5
3,263,463	+	yijO	JDDGAC_17230	0.80	-0.4
3,263,487	+	yijO	JDDGAC_17230	0.83	-1.5
3,263,488	-	yijO	JDDGAC_17230	0.83	-0.2
3,263,528	+	yijO	JDDGAC_17230	0.88	+0.3
3,263,528	+	yijO	JDDGAC_17230	0.88	+0.0
3,263,628	-				+2.0
3,263,628	-				+0.7
3,263,677	-	frwD	JDDGAC_17235	0.18	-0.3
3,263,705	-	frwD	JDDGAC_17235	0.26	+1.0
3,263,903	+	frwD	JDDGAC_17235	0.84	-0.2
3,263,903	+	frwD	JDDGAC_17235	0.84	-0.1
3,263,903	+	frwD	JDDGAC_17235	0.84	+0.7
3,263,903	+	frwD	JDDGAC_17235	0.84	-0.1
3,263,903	+	frwD	JDDGAC_17235	0.84	+0.9
3,263,903	+	frwD	JDDGAC_17235	0.84	+0.1
3,263,904	-	frwD	JDDGAC_17235	0.84	+0.1
3,263,905	+	frwD	JDDGAC_17235	0.85	+0.9
3,263,905	+	frwD	JDDGAC_17235	0.85	+0.1
3,263,905	+	frwD	JDDGAC_17235	0.85	-0.6
3,263,905	+	frwD	JDDGAC_17235	0.85	-0.4
3,263,905	+	frwD	JDDGAC_17235	0.85	-0.0
3,263,905	+	frwD	JDDGAC_17235	0.85	+0.1
3,263,905	+	frwD	JDDGAC_17235	0.85	+0.3
3,263,905	+	frwD	JDDGAC_17235	0.85	-0.1
3,263,905	+	frwD	JDDGAC_17235	0.85	+0.6
3,263,905	+	frwD	JDDGAC_17235	0.85	-0.5
3,263,905	+	frwD	JDDGAC_17235	0.85	+0.0
3,263,905	+	frwD	JDDGAC_17235	0.85	-0.1
3,263,905	+	frwD	JDDGAC_17235	0.85	-2.6
3,263,906	-	frwD	JDDGAC_17235	0.85	-1.0
3,263,906	-	frwD	JDDGAC_17235	0.85	+0.7
3,263,906	-	frwD	JDDGAC_17235	0.85	+0.9
3,263,906	-	frwD	JDDGAC_17235	0.85	+0.3
3,263,906	-	frwD	JDDGAC_17235	0.85	+1.2
3,263,906	-	frwD	JDDGAC_17235	0.85	+0.4
3,263,906	-	frwD	JDDGAC_17235	0.85	-0.6
3,263,906	-	frwD	JDDGAC_17235	0.85	-0.3
3,263,906	-	frwD	JDDGAC_17235	0.85	-0.5
3,263,906	-	frwD	JDDGAC_17235	0.85	+1.6
3,263,909	+	frwD	JDDGAC_17235	0.86	+0.2
3,263,909	+	frwD	JDDGAC_17235	0.86	+1.0
3,263,910	-	frwD	JDDGAC_17235	0.86	-0.5
3,263,910	-	frwD	JDDGAC_17235	0.86	+0.8
3,263,910	-	frwD	JDDGAC_17235	0.86	+0.5
3,263,938	-				+0.6
3,263,950	+				-1.5
3,263,950	+				+0.8
3,263,951	-				+0.9
3,263,951	-				-0.5
3,263,961	-				+0.6
3,263,961	-				+0.0
3,264,092	+	pflC	JDDGAC_17240	0.15	-0.1
3,264,092	+	pflC	JDDGAC_17240	0.15	-0.4
3,264,143	-	pflC	JDDGAC_17240	0.21	+0.1
3,264,163	-	pflC	JDDGAC_17240	0.23	-1.4
3,264,720	+	pflC	JDDGAC_17240	0.87	-1.4
3,264,721	-	pflC	JDDGAC_17240	0.87	-2.8
3,264,876	+				-0.7
3,264,906	+				+0.2
3,264,906	+				-0.2
3,264,906	+				+1.0
3,264,959	-				+0.6
3,264,967	+				+0.4
3,264,967	+				-0.7
3,264,979	+				+0.1
3,264,980	-				+0.6
3,264,980	-				-0.1
3,265,102	+	pflD	JDDGAC_17245	0.13	+1.4
3,265,251	+	pflD	JDDGAC_17245	0.19	+0.1
3,265,252	-	pflD	JDDGAC_17245	0.20	+0.3
3,265,252	-	pflD	JDDGAC_17245	0.20	+0.0
3,265,269	+	pflD	JDDGAC_17245	0.20	-0.9
3,265,290	+	pflD	JDDGAC_17245	0.21	+0.3
3,265,312	-	pflD	JDDGAC_17245	0.22	+0.0
3,265,333	+	pflD	JDDGAC_17245	0.23	+0.1
3,265,365	+	pflD	JDDGAC_17245	0.24	-2.6
3,265,385	+	pflD	JDDGAC_17245	0.25	-0.2
3,265,386	-	pflD	JDDGAC_17245	0.25	+0.5
3,265,433	+	pflD	JDDGAC_17245	0.27	+0.4
3,265,461	-	pflD	JDDGAC_17245	0.29	-0.8
3,265,549	+	pflD	JDDGAC_17245	0.32	+0.6
3,265,552	-	pflD	JDDGAC_17245	0.33	-0.4
3,265,570	+	pflD	JDDGAC_17245	0.33	-0.2
3,265,574	-	pflD	JDDGAC_17245	0.34	+0.0
3,265,623	-	pflD	JDDGAC_17245	0.36	+0.6
3,265,657	+	pflD	JDDGAC_17245	0.37	+1.1
3,265,657	+	pflD	JDDGAC_17245	0.37	+0.1
3,265,657	+	pflD	JDDGAC_17245	0.37	-0.3
3,265,658	-	pflD	JDDGAC_17245	0.37	-0.5
3,265,686	+	pflD	JDDGAC_17245	0.38	-1.7
3,265,686	+	pflD	JDDGAC_17245	0.38	+0.5
3,265,686	+	pflD	JDDGAC_17245	0.38	+0.8
3,265,686	+	pflD	JDDGAC_17245	0.38	-0.7
3,265,687	-	pflD	JDDGAC_17245	0.38	-0.0
3,265,687	-	pflD	JDDGAC_17245	0.38	-0.2
3,265,728	+	pflD	JDDGAC_17245	0.40	+0.2
3,265,728	+	pflD	JDDGAC_17245	0.40	-0.3
3,265,729	-	pflD	JDDGAC_17245	0.40	+0.4
3,265,816	-	pflD	JDDGAC_17245	0.44	+0.0
3,265,836	-	pflD	JDDGAC_17245	0.45	-0.7