Strain Fitness in Escherichia coli ECRC98 around JDDGAC_15870

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnr and nsrR are separated by 38 nucleotidesnsrR and purA are separated by 204 nucleotidespurA and yjeT are separated by 103 nucleotidesyjeT and hflC are separated by 81 nucleotides JDDGAC_15860: rnr - ribonuclease R, at 2,983,051 to 2,985,492 rnr JDDGAC_15865: nsrR - nitric oxide-sensing transcriptional repressor NsrR, at 2,985,531 to 2,985,956 nsrR JDDGAC_15870: purA - adenylosuccinate synthase, at 2,986,161 to 2,987,459 purA JDDGAC_15875: yjeT - Uncharacterized protein YjeT, at 2,987,563 to 2,987,760 yjeT JDDGAC_15880: hflC - protease modulator HflC, at 2,987,842 to 2,988,846 hflC Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2985.167 kb on + strand, within rnrat 2985.168 kb on - strand, within rnrat 2985.180 kb on + strand, within rnrat 2985.368 kb on - strandat 2985.368 kb on - strandat 2985.435 kb on + strandat 2985.452 kb on + strandat 2985.547 kb on - strandat 2985.593 kb on - strand, within nsrRat 2985.593 kb on - strand, within nsrRat 2985.593 kb on - strand, within nsrRat 2985.596 kb on + strand, within nsrRat 2985.609 kb on - strand, within nsrRat 2985.662 kb on + strand, within nsrRat 2985.662 kb on + strand, within nsrRat 2985.731 kb on + strand, within nsrRat 2985.732 kb on - strand, within nsrRat 2985.735 kb on + strand, within nsrRat 2985.736 kb on - strand, within nsrRat 2985.753 kb on - strand, within nsrRat 2985.796 kb on + strand, within nsrRat 2985.810 kb on - strand, within nsrRat 2985.822 kb on + strand, within nsrRat 2985.876 kb on - strand, within nsrRat 2985.911 kb on - strand, within nsrRat 2985.911 kb on - strand, within nsrRat 2985.911 kb on - strand, within nsrRat 2985.924 kb on + strandat 2985.925 kb on - strandat 2985.993 kb on + strandat 2985.993 kb on + strandat 2985.993 kb on + strandat 2985.994 kb on - strandat 2985.994 kb on - strandat 2985.994 kb on - strandat 2985.994 kb on - strandat 2986.005 kb on - strandat 2986.033 kb on + strandat 2986.067 kb on + strandat 2986.067 kb on + strandat 2986.067 kb on + strandat 2986.113 kb on - strandat 2986.113 kb on - strandat 2986.113 kb on - strandat 2986.113 kb on - strandat 2986.140 kb on + strandat 2986.163 kb on - strandat 2986.163 kb on - strandat 2986.264 kb on + strandat 2986.264 kb on + strandat 2986.265 kb on - strandat 2986.412 kb on + strand, within purAat 2986.754 kb on - strand, within purAat 2986.859 kb on + strand, within purAat 2986.930 kb on + strand, within purAat 2987.040 kb on - strand, within purAat 2987.132 kb on - strand, within purAat 2987.262 kb on - strand, within purAat 2987.365 kb on - strandat 2987.371 kb on + strandat 2987.372 kb on - strandat 2987.372 kb on - strandat 2987.412 kb on - strandat 2987.440 kb on - strandat 2987.495 kb on - strandat 2987.588 kb on + strand, within yjeTat 2987.588 kb on + strand, within yjeTat 2987.588 kb on + strand, within yjeTat 2987.588 kb on + strand, within yjeTat 2987.588 kb on + strand, within yjeTat 2987.640 kb on + strand, within yjeTat 2987.693 kb on + strand, within yjeTat 2987.719 kb on + strand, within yjeTat 2987.771 kb on + strandat 2987.773 kb on + strandat 2987.773 kb on + strandat 2987.774 kb on - strandat 2987.838 kb on + strandat 2987.838 kb on + strandat 2987.839 kb on - strandat 2987.839 kb on - strandat 2987.840 kb on + strandat 2987.840 kb on + strandat 2987.840 kb on + strandat 2987.841 kb on - strandat 2987.843 kb on + strandat 2987.982 kb on + strand, within hflCat 2988.255 kb on + strand, within hflCat 2988.255 kb on + strand, within hflCat 2988.349 kb on - strand, within hflCat 2988.394 kb on + strand, within hflC

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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2,985,167 + rnr JDDGAC_15860 0.87 -1.1
2,985,168 - rnr JDDGAC_15860 0.87 -0.2
2,985,180 + rnr JDDGAC_15860 0.87 +0.1
2,985,368 - -0.3
2,985,368 - -1.2
2,985,435 + +0.2
2,985,452 + -0.1
2,985,547 - +0.4
2,985,593 - nsrR JDDGAC_15865 0.15 -3.3
2,985,593 - nsrR JDDGAC_15865 0.15 -1.9
2,985,593 - nsrR JDDGAC_15865 0.15 +0.0
2,985,596 + nsrR JDDGAC_15865 0.15 -0.4
2,985,609 - nsrR JDDGAC_15865 0.18 -1.6
2,985,662 + nsrR JDDGAC_15865 0.31 -1.3
2,985,662 + nsrR JDDGAC_15865 0.31 +0.3
2,985,731 + nsrR JDDGAC_15865 0.47 +0.7
2,985,732 - nsrR JDDGAC_15865 0.47 +1.4
2,985,735 + nsrR JDDGAC_15865 0.48 +0.4
2,985,736 - nsrR JDDGAC_15865 0.48 +1.8
2,985,753 - nsrR JDDGAC_15865 0.52 +0.7
2,985,796 + nsrR JDDGAC_15865 0.62 -0.5
2,985,810 - nsrR JDDGAC_15865 0.65 -2.4
2,985,822 + nsrR JDDGAC_15865 0.68 -2.2
2,985,876 - nsrR JDDGAC_15865 0.81 -0.6
2,985,911 - nsrR JDDGAC_15865 0.89 +0.1
2,985,911 - nsrR JDDGAC_15865 0.89 +0.9
2,985,911 - nsrR JDDGAC_15865 0.89 -0.2
2,985,924 + -0.7
2,985,925 - +1.3
2,985,993 + -2.0
2,985,993 + -1.6
2,985,993 + +0.4
2,985,994 - +0.1
2,985,994 - -0.3
2,985,994 - -0.3
2,985,994 - +1.0
2,986,005 - +0.8
2,986,033 + +0.1
2,986,067 + -0.0
2,986,067 + -2.0
2,986,067 + +0.1
2,986,113 - +0.7
2,986,113 - -0.7
2,986,113 - +0.4
2,986,113 - +0.1
2,986,140 + -1.7
2,986,163 - -1.0
2,986,163 - -0.2
2,986,264 + +0.4
2,986,264 + -0.6
2,986,265 - -0.8
2,986,412 + purA JDDGAC_15870 0.19 +0.0
2,986,754 - purA JDDGAC_15870 0.46 -2.6
2,986,859 + purA JDDGAC_15870 0.54 -1.0
2,986,930 + purA JDDGAC_15870 0.59 -2.6
2,987,040 - purA JDDGAC_15870 0.68 -0.2
2,987,132 - purA JDDGAC_15870 0.75 -1.0
2,987,262 - purA JDDGAC_15870 0.85 -4.6
2,987,365 - -0.7
2,987,371 + -1.3
2,987,372 - -1.8
2,987,372 - -2.8
2,987,412 - -2.0
2,987,440 - -2.4
2,987,495 - -2.1
2,987,588 + yjeT JDDGAC_15875 0.13 +0.6
2,987,588 + yjeT JDDGAC_15875 0.13 -1.5
2,987,588 + yjeT JDDGAC_15875 0.13 -0.6
2,987,588 + yjeT JDDGAC_15875 0.13 -2.3
2,987,588 + yjeT JDDGAC_15875 0.13 +0.0
2,987,640 + yjeT JDDGAC_15875 0.39 +0.2
2,987,693 + yjeT JDDGAC_15875 0.66 +0.1
2,987,719 + yjeT JDDGAC_15875 0.79 +0.0
2,987,771 + +3.2
2,987,773 + -0.2
2,987,773 + +0.8
2,987,774 - -0.8
2,987,838 + +0.6
2,987,838 + -0.3
2,987,839 - +0.3
2,987,839 - +0.4
2,987,840 + -0.1
2,987,840 + +0.6
2,987,840 + +0.6
2,987,841 - +0.3
2,987,843 + +0.1
2,987,982 + hflC JDDGAC_15880 0.14 +0.0
2,988,255 + hflC JDDGAC_15880 0.41 +1.0
2,988,255 + hflC JDDGAC_15880 0.41 -0.6
2,988,349 - hflC JDDGAC_15880 0.50 +1.1
2,988,394 + hflC JDDGAC_15880 0.55 +0.2

Or see this region's nucleotide sequence