Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjU and ytjA are separated by 121 nucleotides ytjA and osmY are separated by 126 nucleotides
JDDGAC_14860: yjjU - Uncharacterized protein YjjU, at 2,772,906 to 2,773,979
yjjU
JDDGAC_14865: ytjA - UPF0391 membrane protein YtjA, at 2,774,101 to 2,774,262
ytjA
JDDGAC_14870: osmY - molecular chaperone OsmY, at 2,774,389 to 2,774,994
osmY
Position (kb)
2774
2775 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2773.105 kb on - strand, within yjjU at 2773.118 kb on + strand, within yjjU at 2773.119 kb on - strand, within yjjU at 2773.121 kb on - strand, within yjjU at 2773.163 kb on + strand, within yjjU at 2773.163 kb on + strand, within yjjU at 2773.163 kb on + strand, within yjjU at 2773.163 kb on + strand, within yjjU at 2773.163 kb on + strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.164 kb on - strand, within yjjU at 2773.167 kb on + strand, within yjjU at 2773.167 kb on + strand, within yjjU at 2773.167 kb on + strand, within yjjU at 2773.336 kb on + strand, within yjjU at 2773.336 kb on + strand, within yjjU at 2773.337 kb on - strand, within yjjU at 2773.337 kb on - strand, within yjjU at 2773.439 kb on - strand, within yjjU at 2773.439 kb on - strand, within yjjU at 2773.442 kb on + strand, within yjjU at 2773.442 kb on + strand, within yjjU at 2773.442 kb on + strand, within yjjU at 2773.442 kb on + strand, within yjjU at 2773.442 kb on + strand, within yjjU at 2773.442 kb on + strand, within yjjU at 2773.443 kb on - strand, within yjjU at 2773.443 kb on - strand, within yjjU at 2773.443 kb on - strand, within yjjU at 2773.537 kb on + strand, within yjjU at 2773.550 kb on - strand, within yjjU at 2773.575 kb on - strand, within yjjU at 2773.575 kb on - strand, within yjjU at 2773.577 kb on - strand, within yjjU at 2773.724 kb on + strand, within yjjU at 2773.724 kb on + strand, within yjjU at 2773.725 kb on - strand, within yjjU at 2773.726 kb on + strand, within yjjU at 2773.727 kb on - strand, within yjjU at 2773.727 kb on - strand, within yjjU at 2773.769 kb on + strand, within yjjU at 2773.771 kb on + strand, within yjjU at 2773.771 kb on + strand, within yjjU at 2773.771 kb on + strand, within yjjU at 2773.810 kb on + strand, within yjjU at 2773.905 kb on + strand at 2773.906 kb on - strand at 2773.906 kb on - strand at 2773.906 kb on - strand at 2773.946 kb on + strand at 2773.946 kb on + strand at 2773.946 kb on + strand at 2773.950 kb on - strand at 2773.965 kb on + strand at 2774.029 kb on - strand at 2774.038 kb on + strand at 2774.103 kb on - strand at 2774.243 kb on - strand, within ytjA at 2774.262 kb on + strand at 2774.263 kb on - strand at 2774.275 kb on + strand at 2774.276 kb on - strand at 2774.276 kb on - strand at 2774.280 kb on + strand at 2774.280 kb on + strand at 2774.281 kb on - strand at 2774.281 kb on - strand at 2774.285 kb on - strand at 2774.334 kb on - strand at 2774.381 kb on - strand at 2774.390 kb on + strand at 2774.390 kb on + strand at 2774.391 kb on - strand at 2774.391 kb on - strand at 2774.394 kb on + strand at 2774.432 kb on - strand at 2774.480 kb on - strand, within osmY at 2774.485 kb on - strand, within osmY at 2774.850 kb on + strand, within osmY at 2774.857 kb on - strand, within osmY at 2774.892 kb on + strand, within osmY at 2774.892 kb on + strand, within osmY at 2774.951 kb on - strand at 2774.951 kb on - strand at 2774.988 kb on + strand at 2774.989 kb on - strand at 2774.989 kb on - strand at 2775.000 kb on + strand at 2775.000 kb on + strand at 2775.008 kb on + strand at 2775.009 kb on - strand at 2775.058 kb on - strand at 2775.078 kb on - strand at 2775.122 kb on - strand at 2775.149 kb on + strand at 2775.152 kb on + strand at 2775.152 kb on + strand at 2775.193 kb on - strand at 2775.214 kb on + strand at 2775.214 kb on + strand at 2775.214 kb on + strand at 2775.215 kb on - strand at 2775.244 kb on - strand at 2775.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 2,773,105 - yjjU JDDGAC_14860 0.19 +0.1 2,773,118 + yjjU JDDGAC_14860 0.20 -0.9 2,773,119 - yjjU JDDGAC_14860 0.20 -0.1 2,773,121 - yjjU JDDGAC_14860 0.20 +2.1 2,773,163 + yjjU JDDGAC_14860 0.24 +1.9 2,773,163 + yjjU JDDGAC_14860 0.24 +0.5 2,773,163 + yjjU JDDGAC_14860 0.24 +1.4 2,773,163 + yjjU JDDGAC_14860 0.24 -0.7 2,773,163 + yjjU JDDGAC_14860 0.24 -0.3 2,773,164 - yjjU JDDGAC_14860 0.24 -1.0 2,773,164 - yjjU JDDGAC_14860 0.24 +0.3 2,773,164 - yjjU JDDGAC_14860 0.24 +1.3 2,773,164 - yjjU JDDGAC_14860 0.24 +1.1 2,773,164 - yjjU JDDGAC_14860 0.24 +0.7 2,773,164 - yjjU JDDGAC_14860 0.24 +0.5 2,773,164 - yjjU JDDGAC_14860 0.24 +0.8 2,773,164 - yjjU JDDGAC_14860 0.24 -0.0 2,773,167 + yjjU JDDGAC_14860 0.24 +2.0 2,773,167 + yjjU JDDGAC_14860 0.24 +0.9 2,773,167 + yjjU JDDGAC_14860 0.24 -0.5 2,773,336 + yjjU JDDGAC_14860 0.40 +0.1 2,773,336 + yjjU JDDGAC_14860 0.40 +0.4 2,773,337 - yjjU JDDGAC_14860 0.40 -0.5 2,773,337 - yjjU JDDGAC_14860 0.40 -0.7 2,773,439 - yjjU JDDGAC_14860 0.50 +0.3 2,773,439 - yjjU JDDGAC_14860 0.50 +0.7 2,773,442 + yjjU JDDGAC_14860 0.50 +0.2 2,773,442 + yjjU JDDGAC_14860 0.50 +0.7 2,773,442 + yjjU JDDGAC_14860 0.50 +0.9 2,773,442 + yjjU JDDGAC_14860 0.50 +1.1 2,773,442 + yjjU JDDGAC_14860 0.50 -0.7 2,773,442 + yjjU JDDGAC_14860 0.50 -0.1 2,773,443 - yjjU JDDGAC_14860 0.50 +0.9 2,773,443 - yjjU JDDGAC_14860 0.50 +0.1 2,773,443 - yjjU JDDGAC_14860 0.50 -0.3 2,773,537 + yjjU JDDGAC_14860 0.59 +0.7 2,773,550 - yjjU JDDGAC_14860 0.60 +0.2 2,773,575 - yjjU JDDGAC_14860 0.62 +0.9 2,773,575 - yjjU JDDGAC_14860 0.62 +0.6 2,773,577 - yjjU JDDGAC_14860 0.62 +0.1 2,773,724 + yjjU JDDGAC_14860 0.76 +0.1 2,773,724 + yjjU JDDGAC_14860 0.76 -1.9 2,773,725 - yjjU JDDGAC_14860 0.76 -0.4 2,773,726 + yjjU JDDGAC_14860 0.76 +0.2 2,773,727 - yjjU JDDGAC_14860 0.76 +0.0 2,773,727 - yjjU JDDGAC_14860 0.76 +1.5 2,773,769 + yjjU JDDGAC_14860 0.80 +0.6 2,773,771 + yjjU JDDGAC_14860 0.81 -0.7 2,773,771 + yjjU JDDGAC_14860 0.81 +0.3 2,773,771 + yjjU JDDGAC_14860 0.81 +0.8 2,773,810 + yjjU JDDGAC_14860 0.84 +0.4 2,773,905 + -0.1 2,773,906 - +0.1 2,773,906 - +0.1 2,773,906 - -0.1 2,773,946 + -0.0 2,773,946 + +0.2 2,773,946 + +0.2 2,773,950 - -2.5 2,773,965 + +0.2 2,774,029 - +0.5 2,774,038 + -0.8 2,774,103 - +0.9 2,774,243 - ytjA JDDGAC_14865 0.88 -1.5 2,774,262 + -1.0 2,774,263 - +0.1 2,774,275 + -0.7 2,774,276 - +0.2 2,774,276 - +0.5 2,774,280 + +0.8 2,774,280 + -1.2 2,774,281 - -0.5 2,774,281 - +0.4 2,774,285 - -0.9 2,774,334 - -0.0 2,774,381 - +0.4 2,774,390 + -1.5 2,774,390 + +0.4 2,774,391 - +0.2 2,774,391 - -0.7 2,774,394 + +1.1 2,774,432 - +0.6 2,774,480 - osmY JDDGAC_14870 0.15 +0.1 2,774,485 - osmY JDDGAC_14870 0.16 -0.6 2,774,850 + osmY JDDGAC_14870 0.76 -0.1 2,774,857 - osmY JDDGAC_14870 0.77 +0.5 2,774,892 + osmY JDDGAC_14870 0.83 -1.5 2,774,892 + osmY JDDGAC_14870 0.83 +0.2 2,774,951 - +0.2 2,774,951 - +0.1 2,774,988 + +0.3 2,774,989 - -1.8 2,774,989 - +2.3 2,775,000 + -3.1 2,775,000 + +0.3 2,775,008 + +1.4 2,775,009 - -0.8 2,775,058 - +0.7 2,775,078 - -0.0 2,775,122 - +0.3 2,775,149 + +0.2 2,775,152 + +0.4 2,775,152 + +0.5 2,775,193 - +0.5 2,775,214 + -0.7 2,775,214 + +0.2 2,775,214 + +0.5 2,775,215 - +0.2 2,775,244 - +0.5 2,775,248 - +0.1
Or see this region's nucleotide sequence