Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14865

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjjU and ytjA are separated by 121 nucleotidesytjA and osmY are separated by 126 nucleotides JDDGAC_14860: yjjU - Uncharacterized protein YjjU, at 2,772,906 to 2,773,979 yjjU JDDGAC_14865: ytjA - UPF0391 membrane protein YtjA, at 2,774,101 to 2,774,262 ytjA JDDGAC_14870: osmY - molecular chaperone OsmY, at 2,774,389 to 2,774,994 osmY Position (kb) 2774 2775Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2773.105 kb on - strand, within yjjUat 2773.118 kb on + strand, within yjjUat 2773.119 kb on - strand, within yjjUat 2773.121 kb on - strand, within yjjUat 2773.163 kb on + strand, within yjjUat 2773.163 kb on + strand, within yjjUat 2773.163 kb on + strand, within yjjUat 2773.163 kb on + strand, within yjjUat 2773.163 kb on + strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.164 kb on - strand, within yjjUat 2773.167 kb on + strand, within yjjUat 2773.167 kb on + strand, within yjjUat 2773.167 kb on + strand, within yjjUat 2773.336 kb on + strand, within yjjUat 2773.336 kb on + strand, within yjjUat 2773.337 kb on - strand, within yjjUat 2773.337 kb on - strand, within yjjUat 2773.439 kb on - strand, within yjjUat 2773.439 kb on - strand, within yjjUat 2773.442 kb on + strand, within yjjUat 2773.442 kb on + strand, within yjjUat 2773.442 kb on + strand, within yjjUat 2773.442 kb on + strand, within yjjUat 2773.442 kb on + strand, within yjjUat 2773.442 kb on + strand, within yjjUat 2773.443 kb on - strand, within yjjUat 2773.443 kb on - strand, within yjjUat 2773.443 kb on - strand, within yjjUat 2773.537 kb on + strand, within yjjUat 2773.550 kb on - strand, within yjjUat 2773.575 kb on - strand, within yjjUat 2773.575 kb on - strand, within yjjUat 2773.577 kb on - strand, within yjjUat 2773.724 kb on + strand, within yjjUat 2773.724 kb on + strand, within yjjUat 2773.725 kb on - strand, within yjjUat 2773.726 kb on + strand, within yjjUat 2773.727 kb on - strand, within yjjUat 2773.727 kb on - strand, within yjjUat 2773.769 kb on + strand, within yjjUat 2773.771 kb on + strand, within yjjUat 2773.771 kb on + strand, within yjjUat 2773.771 kb on + strand, within yjjUat 2773.810 kb on + strand, within yjjUat 2773.905 kb on + strandat 2773.906 kb on - strandat 2773.906 kb on - strandat 2773.906 kb on - strandat 2773.946 kb on + strandat 2773.946 kb on + strandat 2773.946 kb on + strandat 2773.950 kb on - strandat 2773.965 kb on + strandat 2774.029 kb on - strandat 2774.038 kb on + strandat 2774.103 kb on - strandat 2774.243 kb on - strand, within ytjAat 2774.262 kb on + strandat 2774.263 kb on - strandat 2774.275 kb on + strandat 2774.276 kb on - strandat 2774.276 kb on - strandat 2774.280 kb on + strandat 2774.280 kb on + strandat 2774.281 kb on - strandat 2774.281 kb on - strandat 2774.285 kb on - strandat 2774.334 kb on - strandat 2774.381 kb on - strandat 2774.390 kb on + strandat 2774.390 kb on + strandat 2774.391 kb on - strandat 2774.391 kb on - strandat 2774.394 kb on + strandat 2774.432 kb on - strandat 2774.480 kb on - strand, within osmYat 2774.485 kb on - strand, within osmYat 2774.850 kb on + strand, within osmYat 2774.857 kb on - strand, within osmYat 2774.892 kb on + strand, within osmYat 2774.892 kb on + strand, within osmYat 2774.951 kb on - strandat 2774.951 kb on - strandat 2774.988 kb on + strandat 2774.989 kb on - strandat 2774.989 kb on - strandat 2775.000 kb on + strandat 2775.000 kb on + strandat 2775.008 kb on + strandat 2775.009 kb on - strandat 2775.058 kb on - strandat 2775.078 kb on - strandat 2775.122 kb on - strandat 2775.149 kb on + strandat 2775.152 kb on + strandat 2775.152 kb on + strandat 2775.193 kb on - strandat 2775.214 kb on + strandat 2775.214 kb on + strandat 2775.214 kb on + strandat 2775.215 kb on - strandat 2775.244 kb on - strandat 2775.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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2,773,105 - yjjU JDDGAC_14860 0.19 +0.1
2,773,118 + yjjU JDDGAC_14860 0.20 -0.9
2,773,119 - yjjU JDDGAC_14860 0.20 -0.1
2,773,121 - yjjU JDDGAC_14860 0.20 +2.1
2,773,163 + yjjU JDDGAC_14860 0.24 +1.9
2,773,163 + yjjU JDDGAC_14860 0.24 +0.5
2,773,163 + yjjU JDDGAC_14860 0.24 +1.4
2,773,163 + yjjU JDDGAC_14860 0.24 -0.7
2,773,163 + yjjU JDDGAC_14860 0.24 -0.3
2,773,164 - yjjU JDDGAC_14860 0.24 -1.0
2,773,164 - yjjU JDDGAC_14860 0.24 +0.3
2,773,164 - yjjU JDDGAC_14860 0.24 +1.3
2,773,164 - yjjU JDDGAC_14860 0.24 +1.1
2,773,164 - yjjU JDDGAC_14860 0.24 +0.7
2,773,164 - yjjU JDDGAC_14860 0.24 +0.5
2,773,164 - yjjU JDDGAC_14860 0.24 +0.8
2,773,164 - yjjU JDDGAC_14860 0.24 -0.0
2,773,167 + yjjU JDDGAC_14860 0.24 +2.0
2,773,167 + yjjU JDDGAC_14860 0.24 +0.9
2,773,167 + yjjU JDDGAC_14860 0.24 -0.5
2,773,336 + yjjU JDDGAC_14860 0.40 +0.1
2,773,336 + yjjU JDDGAC_14860 0.40 +0.4
2,773,337 - yjjU JDDGAC_14860 0.40 -0.5
2,773,337 - yjjU JDDGAC_14860 0.40 -0.7
2,773,439 - yjjU JDDGAC_14860 0.50 +0.3
2,773,439 - yjjU JDDGAC_14860 0.50 +0.7
2,773,442 + yjjU JDDGAC_14860 0.50 +0.2
2,773,442 + yjjU JDDGAC_14860 0.50 +0.7
2,773,442 + yjjU JDDGAC_14860 0.50 +0.9
2,773,442 + yjjU JDDGAC_14860 0.50 +1.1
2,773,442 + yjjU JDDGAC_14860 0.50 -0.7
2,773,442 + yjjU JDDGAC_14860 0.50 -0.1
2,773,443 - yjjU JDDGAC_14860 0.50 +0.9
2,773,443 - yjjU JDDGAC_14860 0.50 +0.1
2,773,443 - yjjU JDDGAC_14860 0.50 -0.3
2,773,537 + yjjU JDDGAC_14860 0.59 +0.7
2,773,550 - yjjU JDDGAC_14860 0.60 +0.2
2,773,575 - yjjU JDDGAC_14860 0.62 +0.9
2,773,575 - yjjU JDDGAC_14860 0.62 +0.6
2,773,577 - yjjU JDDGAC_14860 0.62 +0.1
2,773,724 + yjjU JDDGAC_14860 0.76 +0.1
2,773,724 + yjjU JDDGAC_14860 0.76 -1.9
2,773,725 - yjjU JDDGAC_14860 0.76 -0.4
2,773,726 + yjjU JDDGAC_14860 0.76 +0.2
2,773,727 - yjjU JDDGAC_14860 0.76 +0.0
2,773,727 - yjjU JDDGAC_14860 0.76 +1.5
2,773,769 + yjjU JDDGAC_14860 0.80 +0.6
2,773,771 + yjjU JDDGAC_14860 0.81 -0.7
2,773,771 + yjjU JDDGAC_14860 0.81 +0.3
2,773,771 + yjjU JDDGAC_14860 0.81 +0.8
2,773,810 + yjjU JDDGAC_14860 0.84 +0.4
2,773,905 + -0.1
2,773,906 - +0.1
2,773,906 - +0.1
2,773,906 - -0.1
2,773,946 + -0.0
2,773,946 + +0.2
2,773,946 + +0.2
2,773,950 - -2.5
2,773,965 + +0.2
2,774,029 - +0.5
2,774,038 + -0.8
2,774,103 - +0.9
2,774,243 - ytjA JDDGAC_14865 0.88 -1.5
2,774,262 + -1.0
2,774,263 - +0.1
2,774,275 + -0.7
2,774,276 - +0.2
2,774,276 - +0.5
2,774,280 + +0.8
2,774,280 + -1.2
2,774,281 - -0.5
2,774,281 - +0.4
2,774,285 - -0.9
2,774,334 - -0.0
2,774,381 - +0.4
2,774,390 + -1.5
2,774,390 + +0.4
2,774,391 - +0.2
2,774,391 - -0.7
2,774,394 + +1.1
2,774,432 - +0.6
2,774,480 - osmY JDDGAC_14870 0.15 +0.1
2,774,485 - osmY JDDGAC_14870 0.16 -0.6
2,774,850 + osmY JDDGAC_14870 0.76 -0.1
2,774,857 - osmY JDDGAC_14870 0.77 +0.5
2,774,892 + osmY JDDGAC_14870 0.83 -1.5
2,774,892 + osmY JDDGAC_14870 0.83 +0.2
2,774,951 - +0.2
2,774,951 - +0.1
2,774,988 + +0.3
2,774,989 - -1.8
2,774,989 - +2.3
2,775,000 + -3.1
2,775,000 + +0.3
2,775,008 + +1.4
2,775,009 - -0.8
2,775,058 - +0.7
2,775,078 - -0.0
2,775,122 - +0.3
2,775,149 + +0.2
2,775,152 + +0.4
2,775,152 + +0.5
2,775,193 - +0.5
2,775,214 + -0.7
2,775,214 + +0.2
2,775,214 + +0.5
2,775,215 - +0.2
2,775,244 - +0.5
2,775,248 - +0.1

Or see this region's nucleotide sequence