Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14015

Experiment: WM_Bas31

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas31
2,594,306	-	rpnC	JDDGAC_14005	0.62	+0.2
2,594,349	+	rpnC	JDDGAC_14005	0.67	-1.6
2,594,349	+	rpnC	JDDGAC_14005	0.67	+0.8
2,594,349	+	rpnC	JDDGAC_14005	0.67	+0.0
2,594,350	-	rpnC	JDDGAC_14005	0.67	+0.1
2,594,350	-	rpnC	JDDGAC_14005	0.67	-0.1
2,594,350	-	rpnC	JDDGAC_14005	0.67	+0.6
2,594,354	+	rpnC	JDDGAC_14005	0.68	+0.2
2,594,450	+	rpnC	JDDGAC_14005	0.78	+0.2
2,594,450	+	rpnC	JDDGAC_14005	0.78	-0.3
2,594,451	-	rpnC	JDDGAC_14005	0.78	-1.2
2,594,507	-	rpnC	JDDGAC_14005	0.85	-0.7
2,594,507	-	rpnC	JDDGAC_14005	0.85	-0.4
2,594,605	-				+0.3
2,594,608	+				-0.3
2,594,822	+				-1.2
2,594,822	+				+0.6
2,594,848	-				-1.1
2,594,901	+				-0.3
2,594,901	+				-1.0
2,594,902	-				+0.3
2,594,910	-				-0.9
2,594,916	+				-0.6
2,594,916	+				+0.7
2,594,917	-				+0.4
2,594,917	-				+0.7
2,594,980	+	panD	JDDGAC_14010	0.17	+0.6
2,594,980	+	panD	JDDGAC_14010	0.17	+0.9
2,594,980	+	panD	JDDGAC_14010	0.17	+0.0
2,594,981	-	panD	JDDGAC_14010	0.17	+0.8
2,595,052	-	panD	JDDGAC_14010	0.35	+1.2
2,595,088	+	panD	JDDGAC_14010	0.45	+0.8
2,595,088	+	panD	JDDGAC_14010	0.45	+1.0
2,595,088	+	panD	JDDGAC_14010	0.45	+0.1
2,595,089	-	panD	JDDGAC_14010	0.45	+0.6
2,595,089	-	panD	JDDGAC_14010	0.45	+0.0
2,595,089	-	panD	JDDGAC_14010	0.45	-0.4
2,595,359	-				+0.6
2,595,363	+				+2.0
2,595,363	+				+0.6
2,595,365	+				-0.7
2,595,365	+				-0.2
2,595,366	-				+0.4
2,595,390	+				+0.4
2,595,516	+	yadE	JDDGAC_14015	0.17	-1.1
2,595,583	+	yadE	JDDGAC_14015	0.23	-1.3
2,595,583	+	yadE	JDDGAC_14015	0.23	+1.0
2,595,583	+	yadE	JDDGAC_14015	0.23	+0.3
2,595,741	+	yadE	JDDGAC_14015	0.36	-2.5
2,595,742	-	yadE	JDDGAC_14015	0.36	-0.0
2,595,822	+	yadE	JDDGAC_14015	0.42	-0.8
2,595,823	-	yadE	JDDGAC_14015	0.42	+0.4
2,595,855	+	yadE	JDDGAC_14015	0.45	+0.7
2,595,855	+	yadE	JDDGAC_14015	0.45	+0.3
2,595,856	-	yadE	JDDGAC_14015	0.45	+0.7
2,595,964	-	yadE	JDDGAC_14015	0.54	+0.1
2,596,007	+	yadE	JDDGAC_14015	0.57	+2.1
2,596,008	-	yadE	JDDGAC_14015	0.57	-2.2
2,596,008	-	yadE	JDDGAC_14015	0.57	-2.3
2,596,056	+	yadE	JDDGAC_14015	0.61	-0.4
2,596,056	+	yadE	JDDGAC_14015	0.61	-0.6
2,596,059	-	yadE	JDDGAC_14015	0.62	+0.3
2,596,120	-	yadE	JDDGAC_14015	0.67	+0.4
2,596,120	-	yadE	JDDGAC_14015	0.67	+0.8
2,596,188	+	yadE	JDDGAC_14015	0.72	-0.2
2,596,188	+	yadE	JDDGAC_14015	0.72	+0.1
2,596,189	-	yadE	JDDGAC_14015	0.72	+0.4
2,596,191	-	yadE	JDDGAC_14015	0.72	+0.4
2,596,213	-	yadE	JDDGAC_14015	0.74	-0.2
2,596,213	-	yadE	JDDGAC_14015	0.74	+0.9
2,596,213	-	yadE	JDDGAC_14015	0.74	-2.1
2,596,217	-	yadE	JDDGAC_14015	0.74	-0.5
2,596,227	+	yadE	JDDGAC_14015	0.75	-1.1
2,596,343	+	yadE	JDDGAC_14015	0.85	+0.7
2,596,344	-	yadE	JDDGAC_14015	0.85	-0.7
2,596,455	+				+0.5
2,596,455	+				+0.3
2,596,456	-				-0.0
2,596,456	-				-0.1
2,596,458	-				-0.3
2,596,458	-				+0.2
2,596,513	-				+0.4
2,596,656	+	yadI	JDDGAC_14020	0.14	-0.1
2,596,657	-	yadI	JDDGAC_14020	0.14	-0.0
2,596,657	-	yadI	JDDGAC_14020	0.14	+0.7
2,596,689	+	yadI	JDDGAC_14020	0.22	-0.4
2,596,747	+	yadI	JDDGAC_14020	0.35	-0.8
2,596,799	-	yadI	JDDGAC_14020	0.46	-1.8
2,596,801	+	yadI	JDDGAC_14020	0.47	-2.3
2,596,817	+	yadI	JDDGAC_14020	0.51	+1.1
2,596,834	+	yadI	JDDGAC_14020	0.54	-0.7
2,596,835	-	yadI	JDDGAC_14020	0.55	-0.6
2,596,908	+	yadI	JDDGAC_14020	0.71	-0.2
2,596,911	+	yadI	JDDGAC_14020	0.72	-0.3
2,596,911	+	yadI	JDDGAC_14020	0.72	+0.4
2,597,016	+				-1.4
2,597,016	+				+0.2
2,597,016	+				-0.0
2,597,017	-				-0.4
2,597,017	-				-1.7
2,597,017	-				+0.5
2,597,017	-				+0.3
2,597,029	+				-1.1
2,597,134	+				+0.1
2,597,145	-				+0.3
2,597,226	-	yadH	JDDGAC_14025	0.11	-2.0
2,597,282	+	yadH	JDDGAC_14025	0.19	-1.2
2,597,282	+	yadH	JDDGAC_14025	0.19	+0.7
2,597,283	-	yadH	JDDGAC_14025	0.19	-1.4
2,597,284	+	yadH	JDDGAC_14025	0.19	+0.3
2,597,362	+	yadH	JDDGAC_14025	0.29	-0.9
2,597,363	-	yadH	JDDGAC_14025	0.29	-0.1