Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11465

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_11455 and ybcJ are separated by 1 nucleotidesybcJ and ybcI are separated by 107 nucleotidesybcI and cysS are separated by 35 nucleotides JDDGAC_11455: JDDGAC_11455 - Bifunctional protein FolD, at 2,075,053 to 2,075,919 _11455 JDDGAC_11460: ybcJ - ribosome-associated protein YbcJ, at 2,075,921 to 2,076,133 ybcJ JDDGAC_11465: ybcI - Inner membrane protein YbcI, at 2,076,241 to 2,076,762 ybcI JDDGAC_11470: cysS - cysteine--tRNA ligase, at 2,076,798 to 2,078,183 cysS Position (kb) 2076 2077Strain fitness (log2 ratio) -2 -1 0 1at 2076.212 kb on - strandat 2076.255 kb on + strandat 2076.256 kb on - strandat 2076.276 kb on - strandat 2076.287 kb on + strandat 2076.323 kb on + strand, within ybcIat 2076.323 kb on + strand, within ybcIat 2076.421 kb on - strand, within ybcIat 2076.458 kb on + strand, within ybcIat 2076.459 kb on - strand, within ybcIat 2076.459 kb on - strand, within ybcIat 2076.459 kb on - strand, within ybcIat 2076.459 kb on - strand, within ybcIat 2076.633 kb on + strand, within ybcIat 2076.690 kb on + strand, within ybcIat 2076.729 kb on - strandat 2076.729 kb on - strandat 2076.729 kb on - strandat 2076.799 kb on + strandat 2076.804 kb on - strandat 2076.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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2,076,212 - +0.2
2,076,255 + +0.3
2,076,256 - +0.1
2,076,276 - +0.3
2,076,287 + +0.3
2,076,323 + ybcI JDDGAC_11465 0.16 +0.6
2,076,323 + ybcI JDDGAC_11465 0.16 +0.6
2,076,421 - ybcI JDDGAC_11465 0.34 -0.1
2,076,458 + ybcI JDDGAC_11465 0.42 +1.2
2,076,459 - ybcI JDDGAC_11465 0.42 -1.7
2,076,459 - ybcI JDDGAC_11465 0.42 +0.4
2,076,459 - ybcI JDDGAC_11465 0.42 -0.2
2,076,459 - ybcI JDDGAC_11465 0.42 -0.3
2,076,633 + ybcI JDDGAC_11465 0.75 +0.5
2,076,690 + ybcI JDDGAC_11465 0.86 +0.1
2,076,729 - +0.1
2,076,729 - +0.3
2,076,729 - +0.5
2,076,799 + -2.1
2,076,804 - +0.6
2,076,804 - -0.6

Or see this region's nucleotide sequence