Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt galT and galT are separated by 9 nucleotides galT and galK are separated by 3 nucleotides
JDDGAC_10370: galT - galactose-1-phosphate uridylyltransferase, at 1,849,387 to 1,850,403
galT
JDDGAC_10375: galT - galactose-1-phosphate uridylyltransferase, at 1,850,413 to 1,851,459
galT
JDDGAC_10380: galK - galactokinase, at 1,851,463 to 1,852,611
galK
Position (kb)
1850
1851
1852 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1849.494 kb on + strand, within galT at 1849.505 kb on + strand, within galT at 1849.676 kb on - strand, within galT at 1849.728 kb on + strand, within galT at 1849.769 kb on - strand, within galT at 1849.792 kb on + strand, within galT at 1849.987 kb on - strand, within galT at 1849.987 kb on - strand, within galT at 1849.987 kb on - strand, within galT at 1850.083 kb on + strand, within galT at 1850.084 kb on - strand, within galT at 1850.093 kb on + strand, within galT at 1850.153 kb on + strand, within galT at 1850.161 kb on + strand, within galT at 1850.162 kb on - strand, within galT at 1850.162 kb on - strand, within galT at 1850.162 kb on - strand, within galT at 1850.181 kb on - strand, within galT at 1850.243 kb on - strand, within galT at 1850.243 kb on - strand, within galT at 1850.584 kb on - strand, within galT at 1850.630 kb on - strand, within galT at 1851.013 kb on + strand, within galT at 1851.114 kb on - strand, within galT at 1851.208 kb on + strand, within galT at 1851.208 kb on + strand, within galT at 1851.238 kb on + strand, within galT at 1851.457 kb on + strand at 1851.575 kb on - strand at 1851.966 kb on + strand, within galK at 1852.129 kb on + strand, within galK at 1852.263 kb on + strand, within galK at 1852.362 kb on + strand, within galK at 1852.448 kb on + strand, within galK at 1852.448 kb on + strand, within galK at 1852.449 kb on - strand, within galK
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 1,849,494 + galT JDDGAC_10370 0.11 -1.7 1,849,505 + galT JDDGAC_10370 0.12 +0.8 1,849,676 - galT JDDGAC_10370 0.28 -1.6 1,849,728 + galT JDDGAC_10370 0.34 +0.6 1,849,769 - galT JDDGAC_10370 0.38 -0.2 1,849,792 + galT JDDGAC_10370 0.40 +1.0 1,849,987 - galT JDDGAC_10370 0.59 -0.0 1,849,987 - galT JDDGAC_10370 0.59 +0.5 1,849,987 - galT JDDGAC_10370 0.59 -1.4 1,850,083 + galT JDDGAC_10370 0.68 +1.1 1,850,084 - galT JDDGAC_10370 0.69 -1.1 1,850,093 + galT JDDGAC_10370 0.69 -1.1 1,850,153 + galT JDDGAC_10370 0.75 -0.7 1,850,161 + galT JDDGAC_10370 0.76 -1.1 1,850,162 - galT JDDGAC_10370 0.76 +0.2 1,850,162 - galT JDDGAC_10370 0.76 +0.2 1,850,162 - galT JDDGAC_10370 0.76 +0.2 1,850,181 - galT JDDGAC_10370 0.78 -1.5 1,850,243 - galT JDDGAC_10370 0.84 -2.8 1,850,243 - galT JDDGAC_10370 0.84 +0.1 1,850,584 - galT JDDGAC_10375 0.16 -1.7 1,850,630 - galT JDDGAC_10375 0.21 +0.4 1,851,013 + galT JDDGAC_10375 0.57 -1.0 1,851,114 - galT JDDGAC_10375 0.67 -0.4 1,851,208 + galT JDDGAC_10375 0.76 -0.1 1,851,208 + galT JDDGAC_10375 0.76 -1.0 1,851,238 + galT JDDGAC_10375 0.79 -1.8 1,851,457 + -0.0 1,851,575 - -0.7 1,851,966 + galK JDDGAC_10380 0.44 +1.0 1,852,129 + galK JDDGAC_10380 0.58 -0.6 1,852,263 + galK JDDGAC_10380 0.70 +0.3 1,852,362 + galK JDDGAC_10380 0.78 +0.3 1,852,448 + galK JDDGAC_10380 0.86 -0.4 1,852,448 + galK JDDGAC_10380 0.86 -1.0 1,852,449 - galK JDDGAC_10380 0.86 -0.7
Or see this region's nucleotide sequence