Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10285

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntexoD and JDDGAC_10270 overlap by 4 nucleotidesJDDGAC_10270 and JDDGAC_10275 overlap by 28 nucleotidesJDDGAC_10275 and JDDGAC_10280 overlap by 4 nucleotidesJDDGAC_10280 and JDDGAC_10285 overlap by 4 nucleotidesJDDGAC_10285 and JDDGAC_10290 are separated by 530 nucleotides JDDGAC_10265: exoD - Putative uncharacterized protein ExoD, at 1,829,958 to 1,830,638 exoD JDDGAC_10270: JDDGAC_10270 - cruciferin, at 1,830,635 to 1,830,817 _10270 JDDGAC_10275: JDDGAC_10275 - DUF1382 domain-containing protein, at 1,830,790 to 1,830,981 _10275 JDDGAC_10280: JDDGAC_10280 - DUF1382 domain-containing protein, at 1,830,978 to 1,831,061 _10280 JDDGAC_10285: JDDGAC_10285 - Cell division protein ZapA, at 1,831,058 to 1,831,273 _10285 JDDGAC_10290: JDDGAC_10290 - hypothetical protein, at 1,831,804 to 1,832,406 _10290 Position (kb) 1831 1832Strain fitness (log2 ratio) -2 -1 0 1at 1830.772 kb on + strand, within JDDGAC_10270at 1830.772 kb on + strand, within JDDGAC_10270at 1830.841 kb on - strand, within JDDGAC_10275at 1830.841 kb on - strand, within JDDGAC_10275at 1830.903 kb on + strand, within JDDGAC_10275at 1830.977 kb on + strandat 1831.106 kb on - strand, within JDDGAC_10285at 1831.430 kb on + strandat 1831.461 kb on - strandat 1831.497 kb on - strandat 1831.937 kb on - strand, within JDDGAC_10290at 1832.010 kb on - strand, within JDDGAC_10290at 1832.050 kb on - strand, within JDDGAC_10290at 1832.057 kb on - strand, within JDDGAC_10290at 1832.059 kb on - strand, within JDDGAC_10290at 1832.141 kb on - strand, within JDDGAC_10290at 1832.218 kb on - strand, within JDDGAC_10290

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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1,830,772 + JDDGAC_10270 0.75 -0.8
1,830,772 + JDDGAC_10270 0.75 -0.1
1,830,841 - JDDGAC_10275 0.27 -0.0
1,830,841 - JDDGAC_10275 0.27 -0.6
1,830,903 + JDDGAC_10275 0.59 +0.6
1,830,977 + +0.0
1,831,106 - JDDGAC_10285 0.22 -2.3
1,831,430 + +0.8
1,831,461 - +0.3
1,831,497 - +1.6
1,831,937 - JDDGAC_10290 0.22 +0.3
1,832,010 - JDDGAC_10290 0.34 -1.4
1,832,050 - JDDGAC_10290 0.41 -0.4
1,832,057 - JDDGAC_10290 0.42 -0.5
1,832,059 - JDDGAC_10290 0.42 -0.4
1,832,141 - JDDGAC_10290 0.56 +0.4
1,832,218 - JDDGAC_10290 0.69 -2.1

Or see this region's nucleotide sequence