Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompF and aspC are separated by 184 nucleotides aspC and gloC are separated by 50 nucleotides gloC and ycbK are separated by 26 nucleotides
JDDGAC_08990: ompF - porin OmpF, at 1,577,687 to 1,578,775
ompF
JDDGAC_08995: aspC - aspartate transaminase, at 1,578,960 to 1,580,150
aspC
JDDGAC_09000: gloC - hydroxyacylglutathione hydrolase GloC, at 1,580,201 to 1,580,848
gloC
JDDGAC_09005: ycbK - Uncharacterized protein YcbK, at 1,580,875 to 1,581,423
ycbK
Position (kb) 1578
1579
1580
1581 Strain fitness (log2 ratio) -2
-1
0
1 at 1578.020 kb on + strand, within ompF at 1578.056 kb on + strand, within ompF at 1578.057 kb on - strand, within ompF at 1578.116 kb on - strand, within ompF at 1578.122 kb on + strand, within ompF at 1578.163 kb on + strand, within ompF at 1578.167 kb on + strand, within ompF at 1578.283 kb on + strand, within ompF at 1578.323 kb on + strand, within ompF at 1578.323 kb on + strand, within ompF at 1578.410 kb on + strand, within ompF at 1578.410 kb on + strand, within ompF at 1578.429 kb on - strand, within ompF at 1578.429 kb on - strand, within ompF at 1578.443 kb on + strand, within ompF at 1578.484 kb on + strand, within ompF at 1578.600 kb on + strand, within ompF at 1578.632 kb on + strand, within ompF at 1578.680 kb on + strand at 1578.689 kb on + strand at 1578.689 kb on + strand at 1578.774 kb on - strand at 1578.776 kb on + strand at 1578.777 kb on - strand at 1578.939 kb on + strand at 1579.408 kb on - strand, within aspC at 1579.733 kb on + strand, within aspC at 1579.806 kb on + strand, within aspC at 1579.898 kb on + strand, within aspC at 1579.979 kb on + strand, within aspC at 1580.237 kb on - strand at 1580.317 kb on + strand, within gloC at 1580.318 kb on - strand, within gloC at 1580.503 kb on + strand, within gloC at 1580.842 kb on - strand at 1580.842 kb on - strand at 1580.874 kb on - strand at 1580.877 kb on - strand at 1580.905 kb on - strand at 1580.905 kb on - strand at 1580.928 kb on - strand at 1580.931 kb on - strand, within ycbK at 1580.936 kb on - strand, within ycbK at 1580.952 kb on + strand, within ycbK at 1580.953 kb on - strand, within ycbK at 1581.022 kb on - strand, within ycbK at 1581.022 kb on - strand, within ycbK at 1581.079 kb on - strand, within ycbK at 1581.131 kb on - strand, within ycbK
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 1,578,020 + ompF JDDGAC_08990 0.31 +0.1 1,578,056 + ompF JDDGAC_08990 0.34 -0.3 1,578,057 - ompF JDDGAC_08990 0.34 +0.0 1,578,116 - ompF JDDGAC_08990 0.39 -0.1 1,578,122 + ompF JDDGAC_08990 0.40 +0.7 1,578,163 + ompF JDDGAC_08990 0.44 -0.2 1,578,167 + ompF JDDGAC_08990 0.44 +0.1 1,578,283 + ompF JDDGAC_08990 0.55 +0.5 1,578,323 + ompF JDDGAC_08990 0.58 +1.1 1,578,323 + ompF JDDGAC_08990 0.58 +0.3 1,578,410 + ompF JDDGAC_08990 0.66 -0.1 1,578,410 + ompF JDDGAC_08990 0.66 -0.6 1,578,429 - ompF JDDGAC_08990 0.68 -1.5 1,578,429 - ompF JDDGAC_08990 0.68 +0.6 1,578,443 + ompF JDDGAC_08990 0.69 +0.1 1,578,484 + ompF JDDGAC_08990 0.73 -1.5 1,578,600 + ompF JDDGAC_08990 0.84 -1.5 1,578,632 + ompF JDDGAC_08990 0.87 -0.4 1,578,680 + +0.4 1,578,689 + -0.3 1,578,689 + -0.2 1,578,774 - +0.5 1,578,776 + +0.4 1,578,777 - -2.4 1,578,939 + -2.6 1,579,408 - aspC JDDGAC_08995 0.38 -0.0 1,579,733 + aspC JDDGAC_08995 0.65 -0.7 1,579,806 + aspC JDDGAC_08995 0.71 -1.4 1,579,898 + aspC JDDGAC_08995 0.79 -1.5 1,579,979 + aspC JDDGAC_08995 0.86 -1.5 1,580,237 - +0.4 1,580,317 + gloC JDDGAC_09000 0.18 +1.0 1,580,318 - gloC JDDGAC_09000 0.18 -1.1 1,580,503 + gloC JDDGAC_09000 0.47 -0.2 1,580,842 - -0.2 1,580,842 - -1.2 1,580,874 - -0.2 1,580,877 - -0.3 1,580,905 - -0.1 1,580,905 - +1.2 1,580,928 - -0.4 1,580,931 - ycbK JDDGAC_09005 0.10 -0.0 1,580,936 - ycbK JDDGAC_09005 0.11 +0.5 1,580,952 + ycbK JDDGAC_09005 0.14 -2.1 1,580,953 - ycbK JDDGAC_09005 0.14 +0.9 1,581,022 - ycbK JDDGAC_09005 0.27 +0.2 1,581,022 - ycbK JDDGAC_09005 0.27 -0.3 1,581,079 - ycbK JDDGAC_09005 0.37 +0.3 1,581,131 - ycbK JDDGAC_09005 0.47 +0.3
Or see this region's nucleotide sequence