Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt terW and JDDGAC_07780 are separated by 260 nucleotides JDDGAC_07780 and tnpB overlap by 14 nucleotides tnpB and JDDGAC_07790 are separated by 81 nucleotides JDDGAC_07790 and JDDGAC_07795 are separated by 3 nucleotides
JDDGAC_07775: terW - tellurium resistance protein TerW, at 1,348,201 to 1,348,668
terW
JDDGAC_07780: JDDGAC_07780 - IS66 family insertion sequence hypothetical protein, at 1,348,929 to 1,349,258
_07780
JDDGAC_07785: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,349,245 to 1,349,586
tnpB
JDDGAC_07790: JDDGAC_07790 - IS66 family transposase, at 1,349,668 to 1,350,525
_07790
JDDGAC_07795: JDDGAC_07795 - IS66-like element IS682 family transposase, at 1,350,529 to 1,352,142
_07795
Position (kb) 1349
1350 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1348.284 kb on + strand, within terW at 1348.648 kb on + strand at 1348.924 kb on - strand at 1349.011 kb on - strand, within JDDGAC_07780 at 1349.320 kb on + strand, within tnpB at 1349.380 kb on - strand, within tnpB at 1349.584 kb on + strand at 1349.971 kb on - strand, within JDDGAC_07790 at 1350.091 kb on + strand, within JDDGAC_07790 at 1350.092 kb on - strand, within JDDGAC_07790 at 1350.094 kb on - strand, within JDDGAC_07790 at 1350.121 kb on + strand, within JDDGAC_07790 at 1350.186 kb on + strand, within JDDGAC_07790 at 1350.186 kb on + strand, within JDDGAC_07790 at 1350.247 kb on - strand, within JDDGAC_07790 at 1350.402 kb on + strand, within JDDGAC_07790 at 1350.482 kb on - strand at 1350.501 kb on - strand at 1350.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 1,348,284 + terW JDDGAC_07775 0.18 -1.4 1,348,648 + +0.8 1,348,924 - -1.9 1,349,011 - JDDGAC_07780 0.25 +1.0 1,349,320 + tnpB JDDGAC_07785 0.22 -0.6 1,349,380 - tnpB JDDGAC_07785 0.39 +0.4 1,349,584 + +0.1 1,349,971 - JDDGAC_07790 0.35 -1.3 1,350,091 + JDDGAC_07790 0.49 +0.1 1,350,092 - JDDGAC_07790 0.49 +0.6 1,350,094 - JDDGAC_07790 0.50 +0.6 1,350,121 + JDDGAC_07790 0.53 +0.0 1,350,186 + JDDGAC_07790 0.60 +0.3 1,350,186 + JDDGAC_07790 0.60 -0.9 1,350,247 - JDDGAC_07790 0.67 +0.3 1,350,402 + JDDGAC_07790 0.86 +0.3 1,350,482 - +1.8 1,350,501 - +1.1 1,350,521 - -2.1
Or see this region's nucleotide sequence