Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06890

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntymfN and xtmA overlap by 4 nucleotidesxtmA and JDDGAC_06890 are separated by 290 nucleotidesJDDGAC_06890 and JDDGAC_06895 are separated by 44 nucleotidesJDDGAC_06895 and JDDGAC_06900 are separated by 222 nucleotidesJDDGAC_06900 and JDDGAC_06905 are separated by 356 nucleotides JDDGAC_06880: ymfN - terminase large subunit, at 1,200,570 to 1,202,231 ymfN JDDGAC_06885: xtmA - terminase small subunit, at 1,202,228 to 1,202,791 xtmA JDDGAC_06890: JDDGAC_06890 - HNH endonuclease, at 1,203,082 to 1,203,447 _06890 JDDGAC_06895: JDDGAC_06895 - hypothetical protein, at 1,203,492 to 1,203,581 _06895 JDDGAC_06900: JDDGAC_06900 - hypothetical protein, at 1,203,804 to 1,203,944 _06900 JDDGAC_06905: JDDGAC_06905 - hypothetical protein, at 1,204,301 to 1,204,525 _06905 Position (kb) 1203 1204Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1203.327 kb on + strand, within JDDGAC_06890at 1203.660 kb on + strandat 1203.660 kb on + strandat 1203.661 kb on - strandat 1203.661 kb on - strandat 1203.665 kb on - strandat 1203.665 kb on - strandat 1203.668 kb on + strandat 1203.700 kb on - strandat 1203.801 kb on - strandat 1203.880 kb on + strand, within JDDGAC_06900at 1203.880 kb on + strand, within JDDGAC_06900at 1203.881 kb on - strand, within JDDGAC_06900at 1203.893 kb on + strand, within JDDGAC_06900at 1203.894 kb on - strand, within JDDGAC_06900at 1203.896 kb on - strand, within JDDGAC_06900at 1204.100 kb on + strandat 1204.293 kb on - strandat 1204.293 kb on - strandat 1204.329 kb on - strand, within JDDGAC_06905at 1204.412 kb on + strand, within JDDGAC_06905at 1204.426 kb on + strand, within JDDGAC_06905

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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1,203,327 + JDDGAC_06890 0.67 -1.2
1,203,660 + +3.0
1,203,660 + -1.1
1,203,661 - -0.4
1,203,661 - +1.3
1,203,665 - +0.4
1,203,665 - +1.0
1,203,668 + -0.1
1,203,700 - +0.7
1,203,801 - -1.6
1,203,880 + JDDGAC_06900 0.54 -1.0
1,203,880 + JDDGAC_06900 0.54 +0.4
1,203,881 - JDDGAC_06900 0.55 +0.3
1,203,893 + JDDGAC_06900 0.63 -0.2
1,203,894 - JDDGAC_06900 0.64 +0.3
1,203,896 - JDDGAC_06900 0.65 +0.5
1,204,100 + +1.8
1,204,293 - -1.7
1,204,293 - +0.4
1,204,329 - JDDGAC_06905 0.12 -1.0
1,204,412 + JDDGAC_06905 0.49 -2.6
1,204,426 + JDDGAC_06905 0.56 +1.5

Or see this region's nucleotide sequence