Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ymfN and xtmA overlap by 4 nucleotides xtmA and JDDGAC_06890 are separated by 290 nucleotides JDDGAC_06890 and JDDGAC_06895 are separated by 44 nucleotides JDDGAC_06895 and JDDGAC_06900 are separated by 222 nucleotides JDDGAC_06900 and JDDGAC_06905 are separated by 356 nucleotides
JDDGAC_06880: ymfN - terminase large subunit, at 1,200,570 to 1,202,231
ymfN
JDDGAC_06885: xtmA - terminase small subunit, at 1,202,228 to 1,202,791
xtmA
JDDGAC_06890: JDDGAC_06890 - HNH endonuclease, at 1,203,082 to 1,203,447
_06890
JDDGAC_06895: JDDGAC_06895 - hypothetical protein, at 1,203,492 to 1,203,581
_06895
JDDGAC_06900: JDDGAC_06900 - hypothetical protein, at 1,203,804 to 1,203,944
_06900
JDDGAC_06905: JDDGAC_06905 - hypothetical protein, at 1,204,301 to 1,204,525
_06905
Position (kb)
1203
1204 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1203.327 kb on + strand, within JDDGAC_06890 at 1203.660 kb on + strand at 1203.660 kb on + strand at 1203.661 kb on - strand at 1203.661 kb on - strand at 1203.665 kb on - strand at 1203.665 kb on - strand at 1203.668 kb on + strand at 1203.700 kb on - strand at 1203.801 kb on - strand at 1203.880 kb on + strand, within JDDGAC_06900 at 1203.880 kb on + strand, within JDDGAC_06900 at 1203.881 kb on - strand, within JDDGAC_06900 at 1203.893 kb on + strand, within JDDGAC_06900 at 1203.894 kb on - strand, within JDDGAC_06900 at 1203.896 kb on - strand, within JDDGAC_06900 at 1204.100 kb on + strand at 1204.293 kb on - strand at 1204.293 kb on - strand at 1204.329 kb on - strand, within JDDGAC_06905 at 1204.412 kb on + strand, within JDDGAC_06905 at 1204.426 kb on + strand, within JDDGAC_06905
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 1,203,327 + JDDGAC_06890 0.67 -1.2 1,203,660 + +3.0 1,203,660 + -1.1 1,203,661 - -0.4 1,203,661 - +1.3 1,203,665 - +0.4 1,203,665 - +1.0 1,203,668 + -0.1 1,203,700 - +0.7 1,203,801 - -1.6 1,203,880 + JDDGAC_06900 0.54 -1.0 1,203,880 + JDDGAC_06900 0.54 +0.4 1,203,881 - JDDGAC_06900 0.55 +0.3 1,203,893 + JDDGAC_06900 0.63 -0.2 1,203,894 - JDDGAC_06900 0.64 +0.3 1,203,896 - JDDGAC_06900 0.65 +0.5 1,204,100 + +1.8 1,204,293 - -1.7 1,204,293 - +0.4 1,204,329 - JDDGAC_06905 0.12 -1.0 1,204,412 + JDDGAC_06905 0.49 -2.6 1,204,426 + JDDGAC_06905 0.56 +1.5
Or see this region's nucleotide sequence