Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjP and ugpA overlap by 14 nucleotides ugpA and JDDGAC_04915 are separated by 20 nucleotides JDDGAC_04915 and ycjN are separated by 48 nucleotides ycjN and ycjM are separated by 13 nucleotides
JDDGAC_04905: ycjP - Inner membrane ABC transporter permease protein YcjP, at 855,168 to 856,010
ycjP
JDDGAC_04910: ugpA - sugar ABC transporter permease, at 855,997 to 856,878
ugpA
JDDGAC_04915: JDDGAC_04915 - ABC transporter substrate-binding protein, at 856,899 to 857,513
_04915
JDDGAC_04920: ycjN - Putative ABC transporter periplasmic-binding protein YcjN, at 857,562 to 858,191
ycjN
JDDGAC_04925: ycjM - Glucosylglycerate phosphorylase, at 858,205 to 859,509
ycjM
Position (kb) 856
857
858 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 856.181 kb on + strand, within ugpA at 856.181 kb on + strand, within ugpA at 856.341 kb on + strand, within ugpA at 856.395 kb on + strand, within ugpA at 856.396 kb on - strand, within ugpA at 856.434 kb on - strand, within ugpA at 856.434 kb on - strand, within ugpA at 856.493 kb on + strand, within ugpA at 856.494 kb on - strand, within ugpA at 856.494 kb on - strand, within ugpA at 856.528 kb on + strand, within ugpA at 856.700 kb on + strand, within ugpA at 856.700 kb on + strand, within ugpA at 856.701 kb on - strand, within ugpA at 856.813 kb on + strand at 857.118 kb on - strand, within JDDGAC_04915 at 857.121 kb on - strand, within JDDGAC_04915 at 857.308 kb on + strand, within JDDGAC_04915 at 857.389 kb on + strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.390 kb on - strand, within JDDGAC_04915 at 857.495 kb on - strand at 857.898 kb on - strand, within ycjN at 857.898 kb on - strand, within ycjN at 857.977 kb on + strand, within ycjN at 858.106 kb on - strand, within ycjN
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 856,181 + ugpA JDDGAC_04910 0.21 +0.5 856,181 + ugpA JDDGAC_04910 0.21 -1.5 856,341 + ugpA JDDGAC_04910 0.39 -0.6 856,395 + ugpA JDDGAC_04910 0.45 +2.0 856,396 - ugpA JDDGAC_04910 0.45 +0.7 856,434 - ugpA JDDGAC_04910 0.50 -2.4 856,434 - ugpA JDDGAC_04910 0.50 +0.2 856,493 + ugpA JDDGAC_04910 0.56 +0.6 856,494 - ugpA JDDGAC_04910 0.56 -0.0 856,494 - ugpA JDDGAC_04910 0.56 +0.3 856,528 + ugpA JDDGAC_04910 0.60 +1.4 856,700 + ugpA JDDGAC_04910 0.80 +0.2 856,700 + ugpA JDDGAC_04910 0.80 +0.9 856,701 - ugpA JDDGAC_04910 0.80 +0.3 856,813 + +0.6 857,118 - JDDGAC_04915 0.36 -0.4 857,121 - JDDGAC_04915 0.36 -0.0 857,308 + JDDGAC_04915 0.67 +0.1 857,389 + JDDGAC_04915 0.80 -0.1 857,390 - JDDGAC_04915 0.80 +0.3 857,390 - JDDGAC_04915 0.80 -2.9 857,390 - JDDGAC_04915 0.80 -0.3 857,390 - JDDGAC_04915 0.80 -0.1 857,390 - JDDGAC_04915 0.80 -0.3 857,390 - JDDGAC_04915 0.80 +0.1 857,495 - +0.2 857,898 - ycjN JDDGAC_04920 0.53 -1.5 857,898 - ycjN JDDGAC_04920 0.53 -0.1 857,977 + ycjN JDDGAC_04920 0.66 -4.1 858,106 - ycjN JDDGAC_04920 0.86 +0.3
Or see this region's nucleotide sequence