Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04510

Experiment: WM_Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_04490 and JDDGAC_04505 are separated by 240 nucleotidesJDDGAC_04505 and terB overlap by 188 nucleotidesterB and Arg_trna are separated by 169 nucleotidesArg_trna and Arg_trna are separated by 13 nucleotidesArg_trna and Ile2_trna are separated by 9 nucleotidesIle2_trna and JDDGAC_04530 are separated by 28 nucleotides JDDGAC_04490: JDDGAC_04490 - DUF1737 domain-containing protein, at 795,333 to 797,183 _04490 JDDGAC_04505: JDDGAC_04505 - hypothetical protein, at 797,424 to 797,942 _04505 JDDGAC_04510: terB - tellurite resistance protein, at 797,755 to 798,186 terB JDDGAC_04515: Arg_trna - tRNA-Arg(tct), at 798,356 to 798,432 _trna JDDGAC_04520: Arg_trna - tRNA-Arg(tcg), at 798,446 to 798,522 _trna JDDGAC_04525: Ile2_trna - tRNA-Ile2(cat), at 798,532 to 798,607 _trna JDDGAC_04530: JDDGAC_04530 - AraC family transcriptional regulator, at 798,636 to 799,223 _04530 Position (kb) 797 798 799Strain fitness (log2 ratio) -3 -2 -1 0 1at 796.878 kb on - strand, within JDDGAC_04490at 797.940 kb on + strandat 798.021 kb on + strand, within terBat 798.078 kb on - strand, within terB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas31
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796,878 - JDDGAC_04490 0.83 -1.0
797,940 + -0.9
798,021 + terB JDDGAC_04510 0.62 -3.2
798,078 - terB JDDGAC_04510 0.75 +0.6

Or see this region's nucleotide sequence