Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ddpB and ddpC overlap by 4 nucleotides ddpC and dppD overlap by 4 nucleotides dppD and ddpF overlap by 8 nucleotides ddpF and osmC are separated by 55 nucleotides
JDDGAC_03815: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 657,025 to 658,047
ddpB
JDDGAC_03820: ddpC - D,D-dipeptide ABC transporter permease, at 658,044 to 658,940
ddpC
JDDGAC_03825: dppD - ABC transporter ATP-binding protein, at 658,937 to 659,923
dppD
JDDGAC_03830: ddpF - putative D,D-dipeptide transport ATP-binding protein DdpF, at 659,916 to 660,842
ddpF
JDDGAC_03835: osmC - peroxiredoxin OsmC, at 660,898 to 661,329
osmC
Position (kb) 658
659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 658.003 kb on + strand at 658.072 kb on + strand at 658.165 kb on + strand, within ddpC at 658.168 kb on + strand, within ddpC at 658.471 kb on + strand, within ddpC at 658.529 kb on + strand, within ddpC at 658.554 kb on + strand, within ddpC at 658.583 kb on - strand, within ddpC at 658.598 kb on + strand, within ddpC at 658.598 kb on + strand, within ddpC at 658.599 kb on - strand, within ddpC at 658.602 kb on + strand, within ddpC at 658.603 kb on - strand, within ddpC at 658.658 kb on + strand, within ddpC at 658.658 kb on + strand, within ddpC at 658.723 kb on + strand, within ddpC at 658.809 kb on + strand, within ddpC at 658.877 kb on + strand at 659.078 kb on - strand, within dppD at 659.101 kb on + strand, within dppD at 659.127 kb on - strand, within dppD at 659.268 kb on + strand, within dppD at 659.311 kb on - strand, within dppD at 659.332 kb on + strand, within dppD at 659.539 kb on + strand, within dppD at 659.539 kb on + strand, within dppD at 659.585 kb on - strand, within dppD at 659.618 kb on + strand, within dppD at 659.628 kb on - strand, within dppD at 659.690 kb on + strand, within dppD at 659.914 kb on - strand at 659.914 kb on - strand at 659.929 kb on + strand at 660.107 kb on + strand, within ddpF at 660.133 kb on - strand, within ddpF at 660.245 kb on + strand, within ddpF at 660.245 kb on + strand, within ddpF at 660.246 kb on - strand, within ddpF at 660.251 kb on + strand, within ddpF at 660.251 kb on + strand, within ddpF at 660.252 kb on - strand, within ddpF at 660.252 kb on - strand, within ddpF at 660.252 kb on - strand, within ddpF at 660.252 kb on - strand, within ddpF at 660.533 kb on - strand, within ddpF at 660.628 kb on - strand, within ddpF at 660.696 kb on - strand, within ddpF at 660.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 658,003 + +0.4 658,072 + -0.5 658,165 + ddpC JDDGAC_03820 0.13 -0.8 658,168 + ddpC JDDGAC_03820 0.14 +0.1 658,471 + ddpC JDDGAC_03820 0.48 -1.0 658,529 + ddpC JDDGAC_03820 0.54 -1.0 658,554 + ddpC JDDGAC_03820 0.57 +0.9 658,583 - ddpC JDDGAC_03820 0.60 +0.6 658,598 + ddpC JDDGAC_03820 0.62 +1.0 658,598 + ddpC JDDGAC_03820 0.62 -1.6 658,599 - ddpC JDDGAC_03820 0.62 +0.6 658,602 + ddpC JDDGAC_03820 0.62 -1.0 658,603 - ddpC JDDGAC_03820 0.62 -1.8 658,658 + ddpC JDDGAC_03820 0.68 -0.3 658,658 + ddpC JDDGAC_03820 0.68 -1.9 658,723 + ddpC JDDGAC_03820 0.76 -0.4 658,809 + ddpC JDDGAC_03820 0.85 -3.0 658,877 + +0.1 659,078 - dppD JDDGAC_03825 0.14 +0.4 659,101 + dppD JDDGAC_03825 0.17 -1.1 659,127 - dppD JDDGAC_03825 0.19 -0.1 659,268 + dppD JDDGAC_03825 0.34 -0.3 659,311 - dppD JDDGAC_03825 0.38 -0.3 659,332 + dppD JDDGAC_03825 0.40 +0.6 659,539 + dppD JDDGAC_03825 0.61 -1.0 659,539 + dppD JDDGAC_03825 0.61 +0.7 659,585 - dppD JDDGAC_03825 0.66 +0.5 659,618 + dppD JDDGAC_03825 0.69 +1.1 659,628 - dppD JDDGAC_03825 0.70 -1.9 659,690 + dppD JDDGAC_03825 0.76 -2.1 659,914 - +0.8 659,914 - +1.2 659,929 + +0.4 660,107 + ddpF JDDGAC_03830 0.21 +1.2 660,133 - ddpF JDDGAC_03830 0.23 -2.3 660,245 + ddpF JDDGAC_03830 0.35 +0.4 660,245 + ddpF JDDGAC_03830 0.35 +0.1 660,246 - ddpF JDDGAC_03830 0.36 +1.2 660,251 + ddpF JDDGAC_03830 0.36 +0.4 660,251 + ddpF JDDGAC_03830 0.36 +0.7 660,252 - ddpF JDDGAC_03830 0.36 +0.3 660,252 - ddpF JDDGAC_03830 0.36 +0.4 660,252 - ddpF JDDGAC_03830 0.36 -2.2 660,252 - ddpF JDDGAC_03830 0.36 +0.4 660,533 - ddpF JDDGAC_03830 0.67 +0.6 660,628 - ddpF JDDGAC_03830 0.77 -2.1 660,696 - ddpF JDDGAC_03830 0.84 +0.7 660,840 + -0.1
Or see this region's nucleotide sequence