Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_03270 and JDDGAC_03275 are separated by 256 nucleotides JDDGAC_03275 and JDDGAC_03280 are separated by 53 nucleotides JDDGAC_03280 and JDDGAC_03285 are separated by 1 nucleotides JDDGAC_03285 and quuQ are separated by 13 nucleotides
JDDGAC_03270: JDDGAC_03270 - type II toxin-antitoxin system RelE/ParE family toxin, at 547,240 to 547,611
_03270
JDDGAC_03275: JDDGAC_03275 - hypothetical protein, at 547,868 to 548,062
_03275
JDDGAC_03280: JDDGAC_03280 - hypothetical protein, at 548,116 to 548,385
_03280
JDDGAC_03285: JDDGAC_03285 - DUF968 domain-containing protein, at 548,387 to 549,436
_03285
JDDGAC_03290: quuQ - Prophage antitermination Q-like protein QuuQ, at 549,450 to 550,202
quuQ
Position (kb) 548
549
550 Strain fitness (log2 ratio) -1
0
1 at 547.660 kb on - strand at 547.817 kb on - strand at 547.901 kb on + strand, within JDDGAC_03275 at 547.902 kb on - strand, within JDDGAC_03275 at 548.187 kb on + strand, within JDDGAC_03280 at 548.267 kb on - strand, within JDDGAC_03280 at 548.715 kb on - strand, within JDDGAC_03285 at 548.869 kb on - strand, within JDDGAC_03285 at 549.477 kb on + strand at 549.821 kb on - strand, within quuQ at 549.953 kb on + strand, within quuQ at 550.283 kb on + strand at 550.283 kb on + strand at 550.283 kb on + strand at 550.283 kb on + strand at 550.284 kb on - strand at 550.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 547,660 - -1.0 547,817 - -1.4 547,901 + JDDGAC_03275 0.17 -0.5 547,902 - JDDGAC_03275 0.17 +0.1 548,187 + JDDGAC_03280 0.26 -0.1 548,267 - JDDGAC_03280 0.56 +0.5 548,715 - JDDGAC_03285 0.31 -0.8 548,869 - JDDGAC_03285 0.46 -1.4 549,477 + +0.1 549,821 - quuQ JDDGAC_03290 0.49 +0.3 549,953 + quuQ JDDGAC_03290 0.67 +1.3 550,283 + +0.9 550,283 + +0.1 550,283 + -1.0 550,283 + -0.1 550,284 - +0.9 550,284 - -0.3
Or see this region's nucleotide sequence