Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pabB and yoaH are separated by 73 nucleotides yoaH and yoaC are separated by 119 nucleotides yoaC and yoaB are separated by 421 nucleotides yoaB and yoaA are separated by 128 nucleotides
JDDGAC_01135: pabB - aminodeoxychorismate synthase component 1, at 191,244 to 192,605
pabB
JDDGAC_01140: yoaH - YoaH family protein, at 192,679 to 192,858
yoaH
JDDGAC_01145: yoaC - Uncharacterized protein YoaC, at 192,978 to 193,277
yoaC
JDDGAC_01150: yoaB - RutC family protein YoaB, at 193,699 to 194,046
yoaB
JDDGAC_01155: yoaA - putative ATP-dependent DNA helicase YoaA, at 194,175 to 196,085
yoaA
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.998 kb on + strand, within pabB at 191.998 kb on + strand, within pabB at 192.045 kb on - strand, within pabB at 192.134 kb on + strand, within pabB at 192.135 kb on - strand, within pabB at 192.135 kb on - strand, within pabB at 192.156 kb on - strand, within pabB at 192.191 kb on - strand, within pabB at 192.191 kb on - strand, within pabB at 192.191 kb on - strand, within pabB at 192.194 kb on + strand, within pabB at 192.222 kb on - strand, within pabB at 192.222 kb on - strand, within pabB at 192.465 kb on - strand, within pabB at 192.574 kb on - strand at 192.579 kb on - strand at 192.594 kb on + strand at 192.885 kb on + strand at 192.931 kb on - strand at 192.969 kb on - strand at 192.993 kb on + strand at 193.007 kb on + strand at 193.007 kb on + strand at 193.008 kb on - strand, within yoaC at 193.008 kb on - strand, within yoaC at 193.008 kb on - strand, within yoaC at 193.009 kb on + strand, within yoaC at 193.010 kb on - strand, within yoaC at 193.010 kb on - strand, within yoaC at 193.176 kb on - strand, within yoaC at 193.317 kb on - strand at 193.329 kb on - strand at 193.354 kb on + strand at 193.355 kb on - strand at 193.533 kb on + strand at 193.543 kb on + strand at 193.543 kb on + strand at 193.543 kb on + strand at 193.701 kb on - strand at 193.720 kb on - strand at 193.813 kb on - strand, within yoaB at 193.973 kb on + strand, within yoaB at 194.000 kb on - strand, within yoaB at 194.037 kb on + strand at 194.038 kb on - strand at 194.058 kb on + strand at 194.145 kb on + strand at 194.146 kb on - strand at 194.228 kb on + strand at 194.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 191,998 + pabB JDDGAC_01135 0.55 -0.9 191,998 + pabB JDDGAC_01135 0.55 +0.2 192,045 - pabB JDDGAC_01135 0.59 -0.3 192,134 + pabB JDDGAC_01135 0.65 -0.3 192,135 - pabB JDDGAC_01135 0.65 +1.0 192,135 - pabB JDDGAC_01135 0.65 -0.8 192,156 - pabB JDDGAC_01135 0.67 +1.0 192,191 - pabB JDDGAC_01135 0.70 +0.3 192,191 - pabB JDDGAC_01135 0.70 +0.5 192,191 - pabB JDDGAC_01135 0.70 -1.7 192,194 + pabB JDDGAC_01135 0.70 +1.8 192,222 - pabB JDDGAC_01135 0.72 +0.0 192,222 - pabB JDDGAC_01135 0.72 -0.0 192,465 - pabB JDDGAC_01135 0.90 +1.0 192,574 - +1.1 192,579 - +0.0 192,594 + +1.0 192,885 + -0.7 192,931 - -0.0 192,969 - +0.6 192,993 + -3.0 193,007 + +1.0 193,007 + +0.4 193,008 - yoaC JDDGAC_01145 0.10 -1.1 193,008 - yoaC JDDGAC_01145 0.10 -1.1 193,008 - yoaC JDDGAC_01145 0.10 +0.3 193,009 + yoaC JDDGAC_01145 0.10 -1.7 193,010 - yoaC JDDGAC_01145 0.11 -3.6 193,010 - yoaC JDDGAC_01145 0.11 -1.0 193,176 - yoaC JDDGAC_01145 0.66 -1.1 193,317 - +0.7 193,329 - +0.5 193,354 + +0.9 193,355 - -0.9 193,533 + +0.5 193,543 + -0.6 193,543 + -1.5 193,543 + -1.2 193,701 - -0.6 193,720 - +1.3 193,813 - yoaB JDDGAC_01150 0.33 +1.3 193,973 + yoaB JDDGAC_01150 0.79 -0.9 194,000 - yoaB JDDGAC_01150 0.86 -0.2 194,037 + +0.2 194,038 - +1.3 194,058 + -0.5 194,145 + +0.1 194,146 - -0.9 194,228 + +0.3 194,228 + +0.3
Or see this region's nucleotide sequence