Experiment: WM_Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt znuB and znuC overlap by 4 nucleotides znuC and znuA are separated by 24 nucleotides znuA and mepM are separated by 15 nucleotides
JDDGAC_00870: znuB - zinc ABC transporter permease subunit ZnuB, at 143,209 to 143,994
znuB
JDDGAC_00875: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 143,991 to 144,746
znuC
JDDGAC_00880: znuA - zinc ABC transporter substrate-binding protein ZnuA, at 144,771 to 145,757
znuA
JDDGAC_00885: mepM - murein DD-endopeptidase MepM, at 145,773 to 147,095
mepM
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 143.867 kb on - strand, within znuB at 143.887 kb on - strand, within znuB at 143.905 kb on - strand, within znuB at 144.034 kb on - strand at 144.051 kb on - strand at 144.269 kb on - strand, within znuC at 144.271 kb on - strand, within znuC at 144.340 kb on - strand, within znuC at 144.455 kb on + strand, within znuC at 144.456 kb on - strand, within znuC at 144.456 kb on - strand, within znuC at 144.456 kb on - strand, within znuC at 144.471 kb on + strand, within znuC at 144.536 kb on - strand, within znuC at 144.586 kb on - strand, within znuC at 144.643 kb on - strand, within znuC at 144.643 kb on - strand, within znuC at 144.666 kb on - strand, within znuC at 144.750 kb on - strand at 144.806 kb on + strand at 144.806 kb on + strand at 144.807 kb on - strand at 144.807 kb on - strand at 144.824 kb on + strand at 145.054 kb on + strand, within znuA at 145.273 kb on + strand, within znuA at 145.452 kb on + strand, within znuA at 145.537 kb on + strand, within znuA at 145.546 kb on + strand, within znuA at 145.546 kb on + strand, within znuA at 145.720 kb on + strand at 145.770 kb on + strand at 145.808 kb on + strand at 145.811 kb on + strand at 145.887 kb on + strand at 146.064 kb on + strand, within mepM at 146.064 kb on + strand, within mepM at 146.130 kb on - strand, within mepM at 146.200 kb on + strand, within mepM at 146.263 kb on - strand, within mepM at 146.270 kb on + strand, within mepM at 146.476 kb on + strand, within mepM at 146.556 kb on + strand, within mepM at 146.557 kb on - strand, within mepM at 146.744 kb on + strand, within mepM
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas31 remove 143,867 - znuB JDDGAC_00870 0.84 +0.8 143,887 - znuB JDDGAC_00870 0.86 -1.1 143,905 - znuB JDDGAC_00870 0.89 -1.6 144,034 - +0.4 144,051 - +0.1 144,269 - znuC JDDGAC_00875 0.37 +1.8 144,271 - znuC JDDGAC_00875 0.37 -0.2 144,340 - znuC JDDGAC_00875 0.46 -0.5 144,455 + znuC JDDGAC_00875 0.61 +0.3 144,456 - znuC JDDGAC_00875 0.62 +0.4 144,456 - znuC JDDGAC_00875 0.62 -1.9 144,456 - znuC JDDGAC_00875 0.62 +0.6 144,471 + znuC JDDGAC_00875 0.63 +0.4 144,536 - znuC JDDGAC_00875 0.72 +1.2 144,586 - znuC JDDGAC_00875 0.79 -0.7 144,643 - znuC JDDGAC_00875 0.86 +1.1 144,643 - znuC JDDGAC_00875 0.86 +0.7 144,666 - znuC JDDGAC_00875 0.89 +0.3 144,750 - -1.6 144,806 + +0.1 144,806 + -0.5 144,807 - +0.7 144,807 - +0.4 144,824 + +0.0 145,054 + znuA JDDGAC_00880 0.29 -0.1 145,273 + znuA JDDGAC_00880 0.51 +0.5 145,452 + znuA JDDGAC_00880 0.69 -1.1 145,537 + znuA JDDGAC_00880 0.78 -0.4 145,546 + znuA JDDGAC_00880 0.79 -0.4 145,546 + znuA JDDGAC_00880 0.79 -2.1 145,720 + +1.1 145,770 + +1.3 145,808 + +0.3 145,811 + -0.0 145,887 + +0.5 146,064 + mepM JDDGAC_00885 0.22 +4.7 146,064 + mepM JDDGAC_00885 0.22 -1.3 146,130 - mepM JDDGAC_00885 0.27 -0.6 146,200 + mepM JDDGAC_00885 0.32 +0.4 146,263 - mepM JDDGAC_00885 0.37 +0.7 146,270 + mepM JDDGAC_00885 0.38 -0.7 146,476 + mepM JDDGAC_00885 0.53 +1.0 146,556 + mepM JDDGAC_00885 0.59 -0.1 146,557 - mepM JDDGAC_00885 0.59 +0.9 146,744 + mepM JDDGAC_00885 0.73 -3.5
Or see this region's nucleotide sequence