Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01515 and OLJFJH_01520 are separated by 207 nucleotides OLJFJH_01520 and OLJFJH_01525 are separated by 50 nucleotides OLJFJH_01525 and OLJFJH_01530 overlap by 15 nucleotides OLJFJH_01530 and OLJFJH_01535 are separated by 86 nucleotides
OLJFJH_01515: OLJFJH_01515 - hypothetical protein, at 250,769 to 251,128
_01515
OLJFJH_01520: OLJFJH_01520 - 2 3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 251,336 to 251,983
_01520
OLJFJH_01525: OLJFJH_01525 - inosine/xanthosine triphosphatase, at 252,034 to 252,582
_01525
OLJFJH_01530: OLJFJH_01530 - trp operon repressor, at 252,568 to 252,900
_01530
OLJFJH_01535: OLJFJH_01535 - murein transglycosylase, at 252,987 to 254,921
_01535
Position (kb) 252
253 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 251.040 kb on + strand, within OLJFJH_01515 at 251.224 kb on - strand at 251.254 kb on + strand at 251.294 kb on + strand at 251.458 kb on + strand, within OLJFJH_01520 at 251.459 kb on - strand, within OLJFJH_01520 at 251.459 kb on - strand, within OLJFJH_01520 at 251.789 kb on + strand, within OLJFJH_01520 at 251.790 kb on - strand, within OLJFJH_01520 at 251.970 kb on + strand at 251.971 kb on - strand at 251.971 kb on - strand at 251.979 kb on - strand at 251.998 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.033 kb on + strand at 252.034 kb on - strand at 252.034 kb on - strand at 252.034 kb on - strand at 252.034 kb on - strand at 252.037 kb on + strand at 252.037 kb on + strand at 252.345 kb on + strand, within OLJFJH_01525 at 252.345 kb on + strand, within OLJFJH_01525 at 252.346 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.494 kb on - strand, within OLJFJH_01525 at 252.542 kb on - strand at 252.577 kb on - strand at 252.645 kb on + strand, within OLJFJH_01530 at 252.735 kb on + strand, within OLJFJH_01530 at 252.739 kb on + strand, within OLJFJH_01530 at 252.740 kb on - strand, within OLJFJH_01530 at 252.803 kb on - strand, within OLJFJH_01530 at 252.803 kb on - strand, within OLJFJH_01530 at 252.890 kb on + strand at 252.890 kb on + strand at 252.890 kb on + strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.920 kb on - strand at 252.940 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.947 kb on - strand at 252.948 kb on + strand at 252.948 kb on + strand at 252.949 kb on - strand at 253.051 kb on + strand at 253.063 kb on + strand at 253.152 kb on - strand at 253.163 kb on + strand at 253.164 kb on - strand at 253.164 kb on - strand at 253.164 kb on - strand at 253.164 kb on - strand at 253.167 kb on + strand at 253.208 kb on + strand, within OLJFJH_01535 at 253.232 kb on - strand, within OLJFJH_01535 at 253.435 kb on + strand, within OLJFJH_01535 at 253.435 kb on + strand, within OLJFJH_01535 at 253.465 kb on + strand, within OLJFJH_01535 at 253.465 kb on + strand, within OLJFJH_01535 at 253.466 kb on - strand, within OLJFJH_01535
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-6 remove 251,040 + OLJFJH_01515 0.75 -0.5 251,224 - +1.0 251,254 + -0.9 251,294 + +0.2 251,458 + OLJFJH_01520 0.19 +1.8 251,459 - OLJFJH_01520 0.19 -0.3 251,459 - OLJFJH_01520 0.19 -0.2 251,789 + OLJFJH_01520 0.70 +0.9 251,790 - OLJFJH_01520 0.70 -1.3 251,970 + -0.5 251,971 - -0.6 251,971 - -1.4 251,979 - -1.1 251,998 + -0.6 252,033 + -0.7 252,033 + +0.9 252,033 + -0.5 252,033 + -0.8 252,033 + -1.6 252,033 + +0.6 252,034 - -0.7 252,034 - -0.0 252,034 - +1.5 252,034 - -0.6 252,037 + +0.0 252,037 + -0.0 252,345 + OLJFJH_01525 0.57 -0.7 252,345 + OLJFJH_01525 0.57 -0.2 252,346 - OLJFJH_01525 0.57 -0.1 252,494 - OLJFJH_01525 0.84 -1.2 252,494 - OLJFJH_01525 0.84 -0.0 252,494 - OLJFJH_01525 0.84 -0.2 252,494 - OLJFJH_01525 0.84 -0.1 252,542 - -0.3 252,577 - -0.2 252,645 + OLJFJH_01530 0.23 +0.1 252,735 + OLJFJH_01530 0.50 -0.1 252,739 + OLJFJH_01530 0.51 +0.4 252,740 - OLJFJH_01530 0.52 -0.1 252,803 - OLJFJH_01530 0.71 +1.1 252,803 - OLJFJH_01530 0.71 -0.3 252,890 + +0.8 252,890 + +0.4 252,890 + +0.3 252,891 - +1.1 252,891 - +1.2 252,891 - -0.2 252,891 - -0.4 252,920 - +0.1 252,940 + -1.3 252,946 + +0.9 252,946 + -0.2 252,946 + +4.5 252,947 - -0.4 252,948 + -0.0 252,948 + -0.0 252,949 - +0.3 253,051 + +1.1 253,063 + +0.2 253,152 - +0.0 253,163 + +0.4 253,164 - -0.5 253,164 - +1.0 253,164 - +0.6 253,164 - +1.5 253,167 + +0.2 253,208 + OLJFJH_01535 0.11 -0.2 253,232 - OLJFJH_01535 0.13 -0.6 253,435 + OLJFJH_01535 0.23 +0.0 253,435 + OLJFJH_01535 0.23 -1.5 253,465 + OLJFJH_01535 0.25 +3.0 253,465 + OLJFJH_01535 0.25 -0.4 253,466 - OLJFJH_01535 0.25 -1.7
Or see this region's nucleotide sequence