Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS17075

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07260 and A4249_RS07265 are separated by 108 nucleotidesA4249_RS07265 and A4249_RS17075 are separated by 150 nucleotidesA4249_RS17075 and A4249_RS07275 are separated by 14 nucleotidesA4249_RS07275 and A4249_RS07280 are separated by 5 nucleotides A4249_RS07260: A4249_RS07260 - aldo/keto reductase, at 1,454,143 to 1,455,129 _RS07260 A4249_RS07265: A4249_RS07265 - tRNA-His, at 1,455,238 to 1,455,314 _RS07265 A4249_RS17075: A4249_RS17075 - energy transducer TonB, at 1,455,465 to 1,456,184 _RS17075 A4249_RS07275: A4249_RS07275 - biopolymer transporter ExbD, at 1,456,199 to 1,456,633 _RS07275 A4249_RS07280: A4249_RS07280 - MotA/TolQ/ExbB proton channel family protein, at 1,456,639 to 1,457,520 _RS07280 Position (kb) 1455 1456 1457Strain fitness (log2 ratio) -2 -1 0 1at 1454.526 kb on - strand, within A4249_RS07260at 1454.600 kb on + strand, within A4249_RS07260at 1454.600 kb on + strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.765 kb on + strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.815 kb on - strand, within A4249_RS07260at 1454.851 kb on - strand, within A4249_RS07260at 1454.851 kb on - strand, within A4249_RS07260at 1454.873 kb on + strand, within A4249_RS07260at 1454.873 kb on + strand, within A4249_RS07260at 1454.874 kb on - strand, within A4249_RS07260at 1454.874 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.964 kb on - strand, within A4249_RS07260at 1454.964 kb on - strand, within A4249_RS07260at 1455.051 kb on - strandat 1455.051 kb on - strandat 1455.051 kb on - strandat 1455.170 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.376 kb on + strandat 1455.376 kb on + strandat 1455.376 kb on + strandat 1455.377 kb on - strandat 1455.377 kb on - strandat 1455.800 kb on + strand, within A4249_RS17075at 1455.820 kb on + strand, within A4249_RS17075at 1455.820 kb on + strand, within A4249_RS17075at 1455.821 kb on - strand, within A4249_RS17075at 1456.015 kb on + strand, within A4249_RS17075at 1456.016 kb on - strand, within A4249_RS17075at 1456.115 kb on - strandat 1456.115 kb on - strandat 1456.168 kb on + strandat 1456.169 kb on - strandat 1456.169 kb on - strandat 1456.184 kb on + strandat 1456.184 kb on + strandat 1456.184 kb on + strandat 1456.184 kb on + strandat 1456.184 kb on + strandat 1456.184 kb on + strandat 1456.184 kb on + strandat 1456.184 kb on + strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.185 kb on - strandat 1456.187 kb on + strandat 1456.187 kb on + strandat 1456.188 kb on - strandat 1456.188 kb on - strandat 1456.188 kb on - strandat 1456.188 kb on - strandat 1456.188 kb on - strandat 1456.188 kb on - strandat 1456.200 kb on + strandat 1456.200 kb on + strandat 1456.200 kb on + strandat 1456.200 kb on + strandat 1456.201 kb on - strandat 1456.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,454,526 - A4249_RS07260 0.39 -0.0
1,454,600 + A4249_RS07260 0.46 +0.0
1,454,600 + A4249_RS07260 0.46 -1.3
1,454,601 - A4249_RS07260 0.46 -0.3
1,454,601 - A4249_RS07260 0.46 -0.6
1,454,601 - A4249_RS07260 0.46 +0.2
1,454,765 + A4249_RS07260 0.63 -1.4
1,454,766 - A4249_RS07260 0.63 -0.4
1,454,766 - A4249_RS07260 0.63 +1.2
1,454,766 - A4249_RS07260 0.63 -0.7
1,454,766 - A4249_RS07260 0.63 -0.8
1,454,766 - A4249_RS07260 0.63 +0.9
1,454,766 - A4249_RS07260 0.63 +1.5
1,454,766 - A4249_RS07260 0.63 +0.4
1,454,766 - A4249_RS07260 0.63 +0.2
1,454,768 + A4249_RS07260 0.63 -0.9
1,454,768 + A4249_RS07260 0.63 +0.7
1,454,768 + A4249_RS07260 0.63 -0.0
1,454,768 + A4249_RS07260 0.63 +1.3
1,454,768 + A4249_RS07260 0.63 +0.3
1,454,769 - A4249_RS07260 0.63 +0.1
1,454,769 - A4249_RS07260 0.63 +0.6
1,454,769 - A4249_RS07260 0.63 +0.4
1,454,769 - A4249_RS07260 0.63 -0.1
1,454,815 - A4249_RS07260 0.68 -0.9
1,454,851 - A4249_RS07260 0.72 +0.5
1,454,851 - A4249_RS07260 0.72 -0.1
1,454,873 + A4249_RS07260 0.74 -2.0
1,454,873 + A4249_RS07260 0.74 +1.3
1,454,874 - A4249_RS07260 0.74 -0.2
1,454,874 - A4249_RS07260 0.74 +0.7
1,454,953 - A4249_RS07260 0.82 +0.9
1,454,953 - A4249_RS07260 0.82 +0.4
1,454,953 - A4249_RS07260 0.82 -0.3
1,454,953 - A4249_RS07260 0.82 -0.8
1,454,964 - A4249_RS07260 0.83 +1.0
1,454,964 - A4249_RS07260 0.83 -0.4
1,455,051 - -0.5
1,455,051 - -1.1
1,455,051 - -1.4
1,455,170 - -0.1
1,455,172 - -0.4
1,455,172 - -0.2
1,455,172 - -0.1
1,455,172 - -0.2
1,455,172 - -0.4
1,455,376 + -1.6
1,455,376 + -0.5
1,455,376 + +0.2
1,455,377 - -0.1
1,455,377 - +0.2
1,455,800 + A4249_RS17075 0.47 +1.3
1,455,820 + A4249_RS17075 0.49 -1.4
1,455,820 + A4249_RS17075 0.49 -0.2
1,455,821 - A4249_RS17075 0.49 +1.5
1,456,015 + A4249_RS17075 0.76 -0.7
1,456,016 - A4249_RS17075 0.77 -0.5
1,456,115 - -0.5
1,456,115 - -1.1
1,456,168 + -1.6
1,456,169 - -1.1
1,456,169 - +0.8
1,456,184 + -0.0
1,456,184 + -0.1
1,456,184 + +1.3
1,456,184 + +0.9
1,456,184 + -0.2
1,456,184 + +0.8
1,456,184 + -0.3
1,456,184 + -0.5
1,456,185 - -0.1
1,456,185 - -0.1
1,456,185 - -2.1
1,456,185 - -0.7
1,456,185 - -0.1
1,456,185 - -0.4
1,456,185 - -0.0
1,456,185 - +0.9
1,456,185 - +0.1
1,456,187 + +0.5
1,456,187 + +0.5
1,456,188 - -0.1
1,456,188 - -0.1
1,456,188 - +0.7
1,456,188 - -0.4
1,456,188 - +0.1
1,456,188 - +0.3
1,456,200 + -1.4
1,456,200 + -1.6
1,456,200 + -0.1
1,456,200 + -2.1
1,456,201 - -0.5
1,456,201 - -0.3

Or see this region's nucleotide sequence