Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15965

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15955 and A4249_RS15960 are separated by 3 nucleotidesA4249_RS15960 and A4249_RS15965 overlap by 1 nucleotidesA4249_RS15965 and A4249_RS15970 are separated by 20 nucleotidesA4249_RS15970 and A4249_RS15975 are separated by 64 nucleotides A4249_RS15955: A4249_RS15955 - hypothetical protein, at 3,220,358 to 3,221,011 _RS15955 A4249_RS15960: A4249_RS15960 - transcriptional regulator, at 3,221,015 to 3,221,317 _RS15960 A4249_RS15965: A4249_RS15965 - YdeI/OmpD-associated family protein, at 3,221,317 to 3,221,913 _RS15965 A4249_RS15970: A4249_RS15970 - dihydropteroate synthase, at 3,221,934 to 3,222,734 _RS15970 A4249_RS15975: A4249_RS15975 - DMT family protein, at 3,222,799 to 3,223,155 _RS15975 Position (kb) 3221 3222Strain fitness (log2 ratio) -2 -1 0 1at 3220.430 kb on - strand, within A4249_RS15955at 3220.430 kb on - strand, within A4249_RS15955at 3220.463 kb on + strand, within A4249_RS15955at 3220.463 kb on + strand, within A4249_RS15955at 3220.464 kb on - strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.761 kb on - strand, within A4249_RS15955at 3220.808 kb on + strand, within A4249_RS15955at 3220.808 kb on + strand, within A4249_RS15955at 3220.808 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.910 kb on + strand, within A4249_RS15955at 3220.910 kb on + strand, within A4249_RS15955at 3220.910 kb on + strand, within A4249_RS15955at 3220.911 kb on - strand, within A4249_RS15955at 3220.911 kb on - strand, within A4249_RS15955at 3221.085 kb on - strand, within A4249_RS15960at 3221.085 kb on - strand, within A4249_RS15960at 3221.085 kb on - strand, within A4249_RS15960at 3221.085 kb on - strand, within A4249_RS15960at 3221.166 kb on - strand, within A4249_RS15960at 3221.189 kb on + strand, within A4249_RS15960at 3221.190 kb on - strand, within A4249_RS15960at 3221.190 kb on - strand, within A4249_RS15960at 3221.190 kb on - strand, within A4249_RS15960at 3221.277 kb on - strand, within A4249_RS15960at 3221.429 kb on + strand, within A4249_RS15965at 3221.429 kb on + strand, within A4249_RS15965at 3221.429 kb on + strand, within A4249_RS15965at 3221.430 kb on - strand, within A4249_RS15965at 3221.430 kb on - strand, within A4249_RS15965at 3221.693 kb on - strand, within A4249_RS15965at 3221.806 kb on + strand, within A4249_RS15965at 3222.707 kb on + strandat 3222.707 kb on + strandat 3222.707 kb on + strandat 3222.707 kb on + strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.764 kb on + strandat 3222.764 kb on + strandat 3222.764 kb on + strandat 3222.764 kb on + strandat 3222.765 kb on - strandat 3222.765 kb on - strandat 3222.765 kb on - strandat 3222.814 kb on + strandat 3222.814 kb on + strandat 3222.815 kb on - strandat 3222.871 kb on + strand, within A4249_RS15975at 3222.872 kb on - strand, within A4249_RS15975at 3222.872 kb on - strand, within A4249_RS15975

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,220,430 - A4249_RS15955 0.11 -0.1
3,220,430 - A4249_RS15955 0.11 -0.5
3,220,463 + A4249_RS15955 0.16 +0.8
3,220,463 + A4249_RS15955 0.16 +0.3
3,220,464 - A4249_RS15955 0.16 +1.5
3,220,484 + A4249_RS15955 0.19 -0.9
3,220,484 + A4249_RS15955 0.19 +0.3
3,220,484 + A4249_RS15955 0.19 -0.7
3,220,484 + A4249_RS15955 0.19 -2.3
3,220,484 + A4249_RS15955 0.19 -1.1
3,220,484 + A4249_RS15955 0.19 -0.5
3,220,484 + A4249_RS15955 0.19 +0.4
3,220,757 + A4249_RS15955 0.61 -1.1
3,220,757 + A4249_RS15955 0.61 -0.5
3,220,757 + A4249_RS15955 0.61 +0.2
3,220,757 + A4249_RS15955 0.61 +0.2
3,220,757 + A4249_RS15955 0.61 +0.9
3,220,758 - A4249_RS15955 0.61 +0.5
3,220,758 - A4249_RS15955 0.61 +0.1
3,220,758 - A4249_RS15955 0.61 +0.4
3,220,758 - A4249_RS15955 0.61 +0.0
3,220,761 - A4249_RS15955 0.62 -2.1
3,220,808 + A4249_RS15955 0.69 +0.0
3,220,808 + A4249_RS15955 0.69 +0.0
3,220,808 + A4249_RS15955 0.69 -0.1
3,220,904 + A4249_RS15955 0.83 -0.2
3,220,904 + A4249_RS15955 0.83 -1.9
3,220,904 + A4249_RS15955 0.83 +0.5
3,220,904 + A4249_RS15955 0.83 -0.5
3,220,910 + A4249_RS15955 0.84 +0.0
3,220,910 + A4249_RS15955 0.84 -0.7
3,220,910 + A4249_RS15955 0.84 +0.5
3,220,911 - A4249_RS15955 0.85 +0.1
3,220,911 - A4249_RS15955 0.85 +0.6
3,221,085 - A4249_RS15960 0.23 -0.3
3,221,085 - A4249_RS15960 0.23 -1.0
3,221,085 - A4249_RS15960 0.23 +0.0
3,221,085 - A4249_RS15960 0.23 -0.4
3,221,166 - A4249_RS15960 0.50 +0.8
3,221,189 + A4249_RS15960 0.57 +0.4
3,221,190 - A4249_RS15960 0.58 +1.2
3,221,190 - A4249_RS15960 0.58 +0.2
3,221,190 - A4249_RS15960 0.58 +0.5
3,221,277 - A4249_RS15960 0.86 -1.1
3,221,429 + A4249_RS15965 0.19 +0.1
3,221,429 + A4249_RS15965 0.19 +1.0
3,221,429 + A4249_RS15965 0.19 +0.4
3,221,430 - A4249_RS15965 0.19 +0.8
3,221,430 - A4249_RS15965 0.19 +0.3
3,221,693 - A4249_RS15965 0.63 +1.5
3,221,806 + A4249_RS15965 0.82 -0.0
3,222,707 + -1.5
3,222,707 + -0.4
3,222,707 + +0.2
3,222,707 + -0.2
3,222,708 - +1.0
3,222,708 - +0.9
3,222,708 - -1.0
3,222,708 - -0.5
3,222,708 - +1.3
3,222,764 + -0.5
3,222,764 + -0.4
3,222,764 + +0.0
3,222,764 + +0.8
3,222,765 - -2.0
3,222,765 - +0.6
3,222,765 - +0.1
3,222,814 + -0.8
3,222,814 + +0.1
3,222,815 - -0.5
3,222,871 + A4249_RS15975 0.20 +0.3
3,222,872 - A4249_RS15975 0.20 -0.6
3,222,872 - A4249_RS15975 0.20 +0.5

Or see this region's nucleotide sequence