Experiment: Hypoxanthine 0.7347 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15955 and A4249_RS15960 are separated by 3 nucleotides A4249_RS15960 and A4249_RS15965 overlap by 1 nucleotides A4249_RS15965 and A4249_RS15970 are separated by 20 nucleotides A4249_RS15970 and A4249_RS15975 are separated by 64 nucleotides
A4249_RS15955: A4249_RS15955 - hypothetical protein, at 3,220,358 to 3,221,011
_RS15955
A4249_RS15960: A4249_RS15960 - transcriptional regulator, at 3,221,015 to 3,221,317
_RS15960
A4249_RS15965: A4249_RS15965 - YdeI/OmpD-associated family protein, at 3,221,317 to 3,221,913
_RS15965
A4249_RS15970: A4249_RS15970 - dihydropteroate synthase, at 3,221,934 to 3,222,734
_RS15970
A4249_RS15975: A4249_RS15975 - DMT family protein, at 3,222,799 to 3,223,155
_RS15975
Position (kb)
3221
3222 Strain fitness (log2 ratio)
-2
-1
0
1 at 3220.430 kb on - strand, within A4249_RS15955 at 3220.430 kb on - strand, within A4249_RS15955 at 3220.463 kb on + strand, within A4249_RS15955 at 3220.463 kb on + strand, within A4249_RS15955 at 3220.464 kb on - strand, within A4249_RS15955 at 3220.484 kb on + strand, within A4249_RS15955 at 3220.484 kb on + strand, within A4249_RS15955 at 3220.484 kb on + strand, within A4249_RS15955 at 3220.484 kb on + strand, within A4249_RS15955 at 3220.484 kb on + strand, within A4249_RS15955 at 3220.484 kb on + strand, within A4249_RS15955 at 3220.484 kb on + strand, within A4249_RS15955 at 3220.757 kb on + strand, within A4249_RS15955 at 3220.757 kb on + strand, within A4249_RS15955 at 3220.757 kb on + strand, within A4249_RS15955 at 3220.757 kb on + strand, within A4249_RS15955 at 3220.757 kb on + strand, within A4249_RS15955 at 3220.758 kb on - strand, within A4249_RS15955 at 3220.758 kb on - strand, within A4249_RS15955 at 3220.758 kb on - strand, within A4249_RS15955 at 3220.758 kb on - strand, within A4249_RS15955 at 3220.761 kb on - strand, within A4249_RS15955 at 3220.808 kb on + strand, within A4249_RS15955 at 3220.808 kb on + strand, within A4249_RS15955 at 3220.808 kb on + strand, within A4249_RS15955 at 3220.904 kb on + strand, within A4249_RS15955 at 3220.904 kb on + strand, within A4249_RS15955 at 3220.904 kb on + strand, within A4249_RS15955 at 3220.904 kb on + strand, within A4249_RS15955 at 3220.910 kb on + strand, within A4249_RS15955 at 3220.910 kb on + strand, within A4249_RS15955 at 3220.910 kb on + strand, within A4249_RS15955 at 3220.911 kb on - strand, within A4249_RS15955 at 3220.911 kb on - strand, within A4249_RS15955 at 3221.085 kb on - strand, within A4249_RS15960 at 3221.085 kb on - strand, within A4249_RS15960 at 3221.085 kb on - strand, within A4249_RS15960 at 3221.085 kb on - strand, within A4249_RS15960 at 3221.166 kb on - strand, within A4249_RS15960 at 3221.189 kb on + strand, within A4249_RS15960 at 3221.190 kb on - strand, within A4249_RS15960 at 3221.190 kb on - strand, within A4249_RS15960 at 3221.190 kb on - strand, within A4249_RS15960 at 3221.277 kb on - strand, within A4249_RS15960 at 3221.429 kb on + strand, within A4249_RS15965 at 3221.429 kb on + strand, within A4249_RS15965 at 3221.429 kb on + strand, within A4249_RS15965 at 3221.430 kb on - strand, within A4249_RS15965 at 3221.430 kb on - strand, within A4249_RS15965 at 3221.693 kb on - strand, within A4249_RS15965 at 3221.806 kb on + strand, within A4249_RS15965 at 3222.707 kb on + strand at 3222.707 kb on + strand at 3222.707 kb on + strand at 3222.707 kb on + strand at 3222.708 kb on - strand at 3222.708 kb on - strand at 3222.708 kb on - strand at 3222.708 kb on - strand at 3222.708 kb on - strand at 3222.764 kb on + strand at 3222.764 kb on + strand at 3222.764 kb on + strand at 3222.764 kb on + strand at 3222.765 kb on - strand at 3222.765 kb on - strand at 3222.765 kb on - strand at 3222.814 kb on + strand at 3222.814 kb on + strand at 3222.815 kb on - strand at 3222.871 kb on + strand, within A4249_RS15975 at 3222.872 kb on - strand, within A4249_RS15975 at 3222.872 kb on - strand, within A4249_RS15975
Per-strain Table
Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C) remove 3,220,430 - A4249_RS15955 0.11 -0.1 3,220,430 - A4249_RS15955 0.11 -0.5 3,220,463 + A4249_RS15955 0.16 +0.8 3,220,463 + A4249_RS15955 0.16 +0.3 3,220,464 - A4249_RS15955 0.16 +1.5 3,220,484 + A4249_RS15955 0.19 -0.9 3,220,484 + A4249_RS15955 0.19 +0.3 3,220,484 + A4249_RS15955 0.19 -0.7 3,220,484 + A4249_RS15955 0.19 -2.3 3,220,484 + A4249_RS15955 0.19 -1.1 3,220,484 + A4249_RS15955 0.19 -0.5 3,220,484 + A4249_RS15955 0.19 +0.4 3,220,757 + A4249_RS15955 0.61 -1.1 3,220,757 + A4249_RS15955 0.61 -0.5 3,220,757 + A4249_RS15955 0.61 +0.2 3,220,757 + A4249_RS15955 0.61 +0.2 3,220,757 + A4249_RS15955 0.61 +0.9 3,220,758 - A4249_RS15955 0.61 +0.5 3,220,758 - A4249_RS15955 0.61 +0.1 3,220,758 - A4249_RS15955 0.61 +0.4 3,220,758 - A4249_RS15955 0.61 +0.0 3,220,761 - A4249_RS15955 0.62 -2.1 3,220,808 + A4249_RS15955 0.69 +0.0 3,220,808 + A4249_RS15955 0.69 +0.0 3,220,808 + A4249_RS15955 0.69 -0.1 3,220,904 + A4249_RS15955 0.83 -0.2 3,220,904 + A4249_RS15955 0.83 -1.9 3,220,904 + A4249_RS15955 0.83 +0.5 3,220,904 + A4249_RS15955 0.83 -0.5 3,220,910 + A4249_RS15955 0.84 +0.0 3,220,910 + A4249_RS15955 0.84 -0.7 3,220,910 + A4249_RS15955 0.84 +0.5 3,220,911 - A4249_RS15955 0.85 +0.1 3,220,911 - A4249_RS15955 0.85 +0.6 3,221,085 - A4249_RS15960 0.23 -0.3 3,221,085 - A4249_RS15960 0.23 -1.0 3,221,085 - A4249_RS15960 0.23 +0.0 3,221,085 - A4249_RS15960 0.23 -0.4 3,221,166 - A4249_RS15960 0.50 +0.8 3,221,189 + A4249_RS15960 0.57 +0.4 3,221,190 - A4249_RS15960 0.58 +1.2 3,221,190 - A4249_RS15960 0.58 +0.2 3,221,190 - A4249_RS15960 0.58 +0.5 3,221,277 - A4249_RS15960 0.86 -1.1 3,221,429 + A4249_RS15965 0.19 +0.1 3,221,429 + A4249_RS15965 0.19 +1.0 3,221,429 + A4249_RS15965 0.19 +0.4 3,221,430 - A4249_RS15965 0.19 +0.8 3,221,430 - A4249_RS15965 0.19 +0.3 3,221,693 - A4249_RS15965 0.63 +1.5 3,221,806 + A4249_RS15965 0.82 -0.0 3,222,707 + -1.5 3,222,707 + -0.4 3,222,707 + +0.2 3,222,707 + -0.2 3,222,708 - +1.0 3,222,708 - +0.9 3,222,708 - -1.0 3,222,708 - -0.5 3,222,708 - +1.3 3,222,764 + -0.5 3,222,764 + -0.4 3,222,764 + +0.0 3,222,764 + +0.8 3,222,765 - -2.0 3,222,765 - +0.6 3,222,765 - +0.1 3,222,814 + -0.8 3,222,814 + +0.1 3,222,815 - -0.5 3,222,871 + A4249_RS15975 0.20 +0.3 3,222,872 - A4249_RS15975 0.20 -0.6 3,222,872 - A4249_RS15975 0.20 +0.5
Or see this region's nucleotide sequence