Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15475

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15465 and A4249_RS15470 are separated by 196 nucleotidesA4249_RS15470 and A4249_RS15475 are separated by 84 nucleotidesA4249_RS15475 and A4249_RS15480 are separated by 57 nucleotides A4249_RS15465: A4249_RS15465 - extensin family protein, at 3,131,609 to 3,132,370 _RS15465 A4249_RS15470: A4249_RS15470 - cold-shock protein, at 3,132,567 to 3,132,770 _RS15470 A4249_RS15475: A4249_RS15475 - DMT family transporter, at 3,132,855 to 3,133,784 _RS15475 A4249_RS15480: A4249_RS15480 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 3,133,842 to 3,136,016 _RS15480 Position (kb) 3132 3133 3134Strain fitness (log2 ratio) -2 -1 0 1 2at 3131.993 kb on + strand, within A4249_RS15465at 3131.994 kb on - strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.071 kb on + strand, within A4249_RS15465at 3132.072 kb on - strand, within A4249_RS15465at 3132.072 kb on - strand, within A4249_RS15465at 3132.072 kb on - strand, within A4249_RS15465at 3132.072 kb on - strand, within A4249_RS15465at 3132.072 kb on - strand, within A4249_RS15465at 3132.072 kb on - strand, within A4249_RS15465at 3132.072 kb on - strand, within A4249_RS15465at 3132.080 kb on + strand, within A4249_RS15465at 3132.080 kb on + strand, within A4249_RS15465at 3132.080 kb on + strand, within A4249_RS15465at 3132.080 kb on + strand, within A4249_RS15465at 3132.080 kb on + strand, within A4249_RS15465at 3132.080 kb on + strand, within A4249_RS15465at 3132.080 kb on + strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.081 kb on - strand, within A4249_RS15465at 3132.098 kb on + strand, within A4249_RS15465at 3132.098 kb on + strand, within A4249_RS15465at 3132.099 kb on - strand, within A4249_RS15465at 3132.099 kb on - strand, within A4249_RS15465at 3132.099 kb on - strand, within A4249_RS15465at 3132.099 kb on - strand, within A4249_RS15465at 3132.308 kb on + strandat 3132.308 kb on + strandat 3132.308 kb on + strandat 3132.308 kb on + strandat 3132.309 kb on - strandat 3132.309 kb on - strandat 3132.309 kb on - strandat 3132.309 kb on - strandat 3132.609 kb on + strand, within A4249_RS15470at 3132.610 kb on - strand, within A4249_RS15470at 3132.714 kb on + strand, within A4249_RS15470at 3132.715 kb on - strand, within A4249_RS15470at 3132.768 kb on + strandat 3132.768 kb on + strandat 3132.768 kb on + strandat 3132.769 kb on - strandat 3132.793 kb on - strandat 3132.793 kb on - strandat 3132.856 kb on + strandat 3132.856 kb on + strandat 3132.856 kb on + strandat 3132.857 kb on - strandat 3132.857 kb on - strandat 3132.933 kb on + strandat 3132.948 kb on + strand, within A4249_RS15475at 3132.948 kb on + strand, within A4249_RS15475at 3132.948 kb on + strand, within A4249_RS15475at 3132.948 kb on + strand, within A4249_RS15475at 3132.948 kb on + strand, within A4249_RS15475at 3132.949 kb on - strand, within A4249_RS15475at 3132.949 kb on - strand, within A4249_RS15475at 3132.949 kb on - strand, within A4249_RS15475at 3132.949 kb on - strand, within A4249_RS15475at 3133.269 kb on + strand, within A4249_RS15475at 3133.283 kb on - strand, within A4249_RS15475at 3133.291 kb on + strand, within A4249_RS15475at 3133.291 kb on + strand, within A4249_RS15475at 3133.292 kb on - strand, within A4249_RS15475at 3133.292 kb on - strand, within A4249_RS15475at 3133.292 kb on - strand, within A4249_RS15475at 3133.522 kb on + strand, within A4249_RS15475at 3133.522 kb on + strand, within A4249_RS15475at 3133.522 kb on + strand, within A4249_RS15475at 3133.522 kb on + strand, within A4249_RS15475at 3133.523 kb on - strand, within A4249_RS15475at 3133.796 kb on + strandat 3133.796 kb on + strandat 3134.066 kb on - strand, within A4249_RS15480at 3134.066 kb on - strand, within A4249_RS15480at 3134.071 kb on + strand, within A4249_RS15480at 3134.071 kb on + strand, within A4249_RS15480at 3134.071 kb on + strand, within A4249_RS15480at 3134.071 kb on + strand, within A4249_RS15480at 3134.071 kb on + strand, within A4249_RS15480at 3134.072 kb on - strand, within A4249_RS15480at 3134.072 kb on - strand, within A4249_RS15480at 3134.072 kb on - strand, within A4249_RS15480at 3134.072 kb on - strand, within A4249_RS15480at 3134.072 kb on - strand, within A4249_RS15480at 3134.224 kb on + strand, within A4249_RS15480at 3134.224 kb on + strand, within A4249_RS15480at 3134.224 kb on + strand, within A4249_RS15480at 3134.225 kb on - strand, within A4249_RS15480at 3134.225 kb on - strand, within A4249_RS15480at 3134.225 kb on - strand, within A4249_RS15480at 3134.263 kb on + strand, within A4249_RS15480at 3134.263 kb on + strand, within A4249_RS15480at 3134.264 kb on - strand, within A4249_RS15480at 3134.425 kb on + strand, within A4249_RS15480at 3134.425 kb on + strand, within A4249_RS15480at 3134.425 kb on + strand, within A4249_RS15480at 3134.425 kb on + strand, within A4249_RS15480at 3134.425 kb on + strand, within A4249_RS15480at 3134.425 kb on + strand, within A4249_RS15480at 3134.425 kb on + strand, within A4249_RS15480at 3134.426 kb on - strand, within A4249_RS15480

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,131,993 + A4249_RS15465 0.50 +0.2
3,131,994 - A4249_RS15465 0.51 -0.0
3,132,071 + A4249_RS15465 0.61 -0.2
3,132,071 + A4249_RS15465 0.61 -0.3
3,132,071 + A4249_RS15465 0.61 +0.6
3,132,071 + A4249_RS15465 0.61 +0.1
3,132,071 + A4249_RS15465 0.61 -0.1
3,132,071 + A4249_RS15465 0.61 +0.5
3,132,071 + A4249_RS15465 0.61 +0.5
3,132,071 + A4249_RS15465 0.61 -0.9
3,132,072 - A4249_RS15465 0.61 -0.2
3,132,072 - A4249_RS15465 0.61 -2.7
3,132,072 - A4249_RS15465 0.61 +0.0
3,132,072 - A4249_RS15465 0.61 +0.1
3,132,072 - A4249_RS15465 0.61 +1.0
3,132,072 - A4249_RS15465 0.61 -0.7
3,132,072 - A4249_RS15465 0.61 -0.1
3,132,080 + A4249_RS15465 0.62 -0.4
3,132,080 + A4249_RS15465 0.62 +1.1
3,132,080 + A4249_RS15465 0.62 +0.5
3,132,080 + A4249_RS15465 0.62 -1.0
3,132,080 + A4249_RS15465 0.62 +1.3
3,132,080 + A4249_RS15465 0.62 +0.8
3,132,080 + A4249_RS15465 0.62 -0.5
3,132,081 - A4249_RS15465 0.62 -0.0
3,132,081 - A4249_RS15465 0.62 +0.5
3,132,081 - A4249_RS15465 0.62 +2.0
3,132,081 - A4249_RS15465 0.62 -1.3
3,132,081 - A4249_RS15465 0.62 +0.7
3,132,081 - A4249_RS15465 0.62 +0.5
3,132,081 - A4249_RS15465 0.62 +1.3
3,132,081 - A4249_RS15465 0.62 -1.0
3,132,081 - A4249_RS15465 0.62 -0.4
3,132,081 - A4249_RS15465 0.62 -0.8
3,132,081 - A4249_RS15465 0.62 +0.4
3,132,081 - A4249_RS15465 0.62 +0.7
3,132,098 + A4249_RS15465 0.64 -0.1
3,132,098 + A4249_RS15465 0.64 +0.3
3,132,099 - A4249_RS15465 0.64 -0.2
3,132,099 - A4249_RS15465 0.64 -0.5
3,132,099 - A4249_RS15465 0.64 +0.8
3,132,099 - A4249_RS15465 0.64 +0.5
3,132,308 + +0.8
3,132,308 + +0.7
3,132,308 + +0.5
3,132,308 + -0.2
3,132,309 - -0.1
3,132,309 - +0.1
3,132,309 - +0.0
3,132,309 - +0.0
3,132,609 + A4249_RS15470 0.21 +0.2
3,132,610 - A4249_RS15470 0.21 -0.5
3,132,714 + A4249_RS15470 0.72 +0.5
3,132,715 - A4249_RS15470 0.73 +0.0
3,132,768 + -0.0
3,132,768 + +0.0
3,132,768 + +0.2
3,132,769 - -1.2
3,132,793 - +0.6
3,132,793 - +1.3
3,132,856 + -0.1
3,132,856 + +0.5
3,132,856 + +0.3
3,132,857 - -0.1
3,132,857 - -0.3
3,132,933 + -1.0
3,132,948 + A4249_RS15475 0.10 -0.2
3,132,948 + A4249_RS15475 0.10 -0.5
3,132,948 + A4249_RS15475 0.10 -0.3
3,132,948 + A4249_RS15475 0.10 -0.6
3,132,948 + A4249_RS15475 0.10 -1.6
3,132,949 - A4249_RS15475 0.10 -0.1
3,132,949 - A4249_RS15475 0.10 -0.3
3,132,949 - A4249_RS15475 0.10 -0.2
3,132,949 - A4249_RS15475 0.10 -1.2
3,133,269 + A4249_RS15475 0.45 +0.5
3,133,283 - A4249_RS15475 0.46 -1.1
3,133,291 + A4249_RS15475 0.47 -0.2
3,133,291 + A4249_RS15475 0.47 +0.0
3,133,292 - A4249_RS15475 0.47 +0.5
3,133,292 - A4249_RS15475 0.47 +0.3
3,133,292 - A4249_RS15475 0.47 +0.2
3,133,522 + A4249_RS15475 0.72 -1.3
3,133,522 + A4249_RS15475 0.72 -0.3
3,133,522 + A4249_RS15475 0.72 +1.6
3,133,522 + A4249_RS15475 0.72 -1.0
3,133,523 - A4249_RS15475 0.72 +0.1
3,133,796 + +0.0
3,133,796 + +0.3
3,134,066 - A4249_RS15480 0.10 -0.8
3,134,066 - A4249_RS15480 0.10 -0.4
3,134,071 + A4249_RS15480 0.11 -1.0
3,134,071 + A4249_RS15480 0.11 -0.6
3,134,071 + A4249_RS15480 0.11 -0.1
3,134,071 + A4249_RS15480 0.11 -0.5
3,134,071 + A4249_RS15480 0.11 -0.5
3,134,072 - A4249_RS15480 0.11 -0.4
3,134,072 - A4249_RS15480 0.11 +0.2
3,134,072 - A4249_RS15480 0.11 -0.8
3,134,072 - A4249_RS15480 0.11 +1.0
3,134,072 - A4249_RS15480 0.11 -0.4
3,134,224 + A4249_RS15480 0.18 +0.0
3,134,224 + A4249_RS15480 0.18 -0.7
3,134,224 + A4249_RS15480 0.18 -0.4
3,134,225 - A4249_RS15480 0.18 +0.1
3,134,225 - A4249_RS15480 0.18 +0.1
3,134,225 - A4249_RS15480 0.18 -0.4
3,134,263 + A4249_RS15480 0.19 +0.1
3,134,263 + A4249_RS15480 0.19 -0.7
3,134,264 - A4249_RS15480 0.19 +0.8
3,134,425 + A4249_RS15480 0.27 +0.6
3,134,425 + A4249_RS15480 0.27 -1.0
3,134,425 + A4249_RS15480 0.27 -1.0
3,134,425 + A4249_RS15480 0.27 +0.6
3,134,425 + A4249_RS15480 0.27 +0.2
3,134,425 + A4249_RS15480 0.27 +0.8
3,134,425 + A4249_RS15480 0.27 -0.8
3,134,426 - A4249_RS15480 0.27 +0.1

Or see this region's nucleotide sequence