Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14555

Experiment: Hypoxanthine 0.7347 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS14550 and A4249_RS14555 are separated by 128 nucleotidesA4249_RS14555 and A4249_RS14560 are separated by 62 nucleotides A4249_RS14550: A4249_RS14550 - AMP nucleosidase, at 2,945,324 to 2,946,769 _RS14550 A4249_RS14555: A4249_RS14555 - multidrug effflux MFS transporter, at 2,946,898 to 2,948,148 _RS14555 A4249_RS14560: A4249_RS14560 - M1 family metallopeptidase, at 2,948,211 to 2,950,163 _RS14560 Position (kb) 2946 2947 2948 2949Strain fitness (log2 ratio) -2 -1 0 1 2at 2945.968 kb on + strand, within A4249_RS14550at 2945.992 kb on - strand, within A4249_RS14550at 2945.992 kb on - strand, within A4249_RS14550at 2946.162 kb on + strand, within A4249_RS14550at 2946.162 kb on + strand, within A4249_RS14550at 2946.162 kb on + strand, within A4249_RS14550at 2946.162 kb on + strand, within A4249_RS14550at 2946.163 kb on - strand, within A4249_RS14550at 2946.163 kb on - strand, within A4249_RS14550at 2946.163 kb on - strand, within A4249_RS14550at 2946.163 kb on - strand, within A4249_RS14550at 2946.180 kb on + strand, within A4249_RS14550at 2946.180 kb on + strand, within A4249_RS14550at 2946.180 kb on + strand, within A4249_RS14550at 2946.180 kb on + strand, within A4249_RS14550at 2946.181 kb on - strand, within A4249_RS14550at 2946.181 kb on - strand, within A4249_RS14550at 2946.213 kb on + strand, within A4249_RS14550at 2946.213 kb on + strand, within A4249_RS14550at 2946.405 kb on + strand, within A4249_RS14550at 2946.405 kb on + strand, within A4249_RS14550at 2946.406 kb on - strand, within A4249_RS14550at 2946.454 kb on + strand, within A4249_RS14550at 2946.454 kb on + strand, within A4249_RS14550at 2946.454 kb on + strand, within A4249_RS14550at 2946.454 kb on + strand, within A4249_RS14550at 2946.455 kb on - strand, within A4249_RS14550at 2946.455 kb on - strand, within A4249_RS14550at 2946.455 kb on - strand, within A4249_RS14550at 2946.455 kb on - strand, within A4249_RS14550at 2946.455 kb on - strand, within A4249_RS14550at 2946.456 kb on + strand, within A4249_RS14550at 2946.456 kb on + strand, within A4249_RS14550at 2946.456 kb on + strand, within A4249_RS14550at 2946.456 kb on + strand, within A4249_RS14550at 2946.456 kb on + strand, within A4249_RS14550at 2946.456 kb on + strand, within A4249_RS14550at 2946.457 kb on - strand, within A4249_RS14550at 2946.457 kb on - strand, within A4249_RS14550at 2946.493 kb on - strand, within A4249_RS14550at 2946.531 kb on + strand, within A4249_RS14550at 2946.532 kb on - strand, within A4249_RS14550at 2946.532 kb on - strand, within A4249_RS14550at 2946.717 kb on + strandat 2946.848 kb on - strandat 2947.084 kb on + strand, within A4249_RS14555at 2947.084 kb on + strand, within A4249_RS14555at 2947.085 kb on - strand, within A4249_RS14555at 2947.085 kb on - strand, within A4249_RS14555at 2947.085 kb on - strand, within A4249_RS14555at 2947.117 kb on + strand, within A4249_RS14555at 2947.117 kb on + strand, within A4249_RS14555at 2947.118 kb on - strand, within A4249_RS14555at 2947.118 kb on - strand, within A4249_RS14555at 2947.118 kb on - strand, within A4249_RS14555at 2947.118 kb on - strand, within A4249_RS14555at 2947.118 kb on - strand, within A4249_RS14555at 2947.177 kb on + strand, within A4249_RS14555at 2947.177 kb on + strand, within A4249_RS14555at 2947.177 kb on + strand, within A4249_RS14555at 2947.177 kb on + strand, within A4249_RS14555at 2947.178 kb on - strand, within A4249_RS14555at 2947.178 kb on - strand, within A4249_RS14555at 2947.178 kb on - strand, within A4249_RS14555at 2947.178 kb on - strand, within A4249_RS14555at 2947.178 kb on - strand, within A4249_RS14555at 2947.178 kb on - strand, within A4249_RS14555at 2947.304 kb on - strand, within A4249_RS14555at 2947.540 kb on + strand, within A4249_RS14555at 2947.541 kb on - strand, within A4249_RS14555at 2947.541 kb on - strand, within A4249_RS14555at 2947.541 kb on - strand, within A4249_RS14555at 2947.577 kb on - strand, within A4249_RS14555at 2948.550 kb on + strand, within A4249_RS14560at 2948.550 kb on + strand, within A4249_RS14560at 2948.550 kb on + strand, within A4249_RS14560at 2948.551 kb on - strand, within A4249_RS14560at 2948.551 kb on - strand, within A4249_RS14560at 2948.551 kb on - strand, within A4249_RS14560at 2948.551 kb on - strand, within A4249_RS14560at 2948.551 kb on - strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.598 kb on + strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.599 kb on - strand, within A4249_RS14560at 2948.718 kb on + strand, within A4249_RS14560at 2948.718 kb on + strand, within A4249_RS14560at 2948.719 kb on - strand, within A4249_RS14560at 2948.719 kb on - strand, within A4249_RS14560at 2948.719 kb on - strand, within A4249_RS14560at 2948.719 kb on - strand, within A4249_RS14560at 2948.719 kb on - strand, within A4249_RS14560at 2948.719 kb on - strand, within A4249_RS14560at 2948.796 kb on + strand, within A4249_RS14560at 2948.796 kb on + strand, within A4249_RS14560at 2948.796 kb on + strand, within A4249_RS14560at 2948.797 kb on - strand, within A4249_RS14560at 2948.797 kb on - strand, within A4249_RS14560at 2948.797 kb on - strand, within A4249_RS14560at 2948.797 kb on - strand, within A4249_RS14560at 2948.797 kb on - strand, within A4249_RS14560at 2948.928 kb on + strand, within A4249_RS14560at 2948.928 kb on + strand, within A4249_RS14560at 2948.929 kb on - strand, within A4249_RS14560at 2948.929 kb on - strand, within A4249_RS14560at 2949.072 kb on + strand, within A4249_RS14560at 2949.072 kb on + strand, within A4249_RS14560at 2949.072 kb on + strand, within A4249_RS14560at 2949.072 kb on + strand, within A4249_RS14560at 2949.072 kb on + strand, within A4249_RS14560at 2949.073 kb on - strand, within A4249_RS14560at 2949.073 kb on - strand, within A4249_RS14560at 2949.073 kb on - strand, within A4249_RS14560at 2949.073 kb on - strand, within A4249_RS14560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
remove
2,945,968 + A4249_RS14550 0.45 +0.8
2,945,992 - A4249_RS14550 0.46 +0.1
2,945,992 - A4249_RS14550 0.46 +0.1
2,946,162 + A4249_RS14550 0.58 +1.5
2,946,162 + A4249_RS14550 0.58 +1.3
2,946,162 + A4249_RS14550 0.58 +1.1
2,946,162 + A4249_RS14550 0.58 +0.7
2,946,163 - A4249_RS14550 0.58 -0.5
2,946,163 - A4249_RS14550 0.58 -0.7
2,946,163 - A4249_RS14550 0.58 -0.5
2,946,163 - A4249_RS14550 0.58 -0.3
2,946,180 + A4249_RS14550 0.59 -0.3
2,946,180 + A4249_RS14550 0.59 +1.1
2,946,180 + A4249_RS14550 0.59 +1.3
2,946,180 + A4249_RS14550 0.59 -0.9
2,946,181 - A4249_RS14550 0.59 +0.4
2,946,181 - A4249_RS14550 0.59 +0.5
2,946,213 + A4249_RS14550 0.61 +0.1
2,946,213 + A4249_RS14550 0.61 +1.2
2,946,405 + A4249_RS14550 0.75 +0.3
2,946,405 + A4249_RS14550 0.75 +0.1
2,946,406 - A4249_RS14550 0.75 +1.5
2,946,454 + A4249_RS14550 0.78 -0.9
2,946,454 + A4249_RS14550 0.78 +0.3
2,946,454 + A4249_RS14550 0.78 +0.1
2,946,454 + A4249_RS14550 0.78 -0.9
2,946,455 - A4249_RS14550 0.78 -1.1
2,946,455 - A4249_RS14550 0.78 +0.5
2,946,455 - A4249_RS14550 0.78 +0.6
2,946,455 - A4249_RS14550 0.78 -0.0
2,946,455 - A4249_RS14550 0.78 +1.3
2,946,456 + A4249_RS14550 0.78 +0.9
2,946,456 + A4249_RS14550 0.78 -0.0
2,946,456 + A4249_RS14550 0.78 +1.1
2,946,456 + A4249_RS14550 0.78 +1.5
2,946,456 + A4249_RS14550 0.78 -0.3
2,946,456 + A4249_RS14550 0.78 +0.3
2,946,457 - A4249_RS14550 0.78 -0.5
2,946,457 - A4249_RS14550 0.78 -0.5
2,946,493 - A4249_RS14550 0.81 +1.2
2,946,531 + A4249_RS14550 0.83 +0.3
2,946,532 - A4249_RS14550 0.84 -0.3
2,946,532 - A4249_RS14550 0.84 +0.5
2,946,717 + +0.9
2,946,848 - -0.0
2,947,084 + A4249_RS14555 0.15 +1.4
2,947,084 + A4249_RS14555 0.15 +0.1
2,947,085 - A4249_RS14555 0.15 +1.9
2,947,085 - A4249_RS14555 0.15 -0.5
2,947,085 - A4249_RS14555 0.15 +1.4
2,947,117 + A4249_RS14555 0.18 +1.2
2,947,117 + A4249_RS14555 0.18 +0.8
2,947,118 - A4249_RS14555 0.18 -0.0
2,947,118 - A4249_RS14555 0.18 -0.7
2,947,118 - A4249_RS14555 0.18 +0.1
2,947,118 - A4249_RS14555 0.18 +0.8
2,947,118 - A4249_RS14555 0.18 -1.4
2,947,177 + A4249_RS14555 0.22 -0.1
2,947,177 + A4249_RS14555 0.22 -0.4
2,947,177 + A4249_RS14555 0.22 -1.0
2,947,177 + A4249_RS14555 0.22 -0.1
2,947,178 - A4249_RS14555 0.22 -0.2
2,947,178 - A4249_RS14555 0.22 +0.7
2,947,178 - A4249_RS14555 0.22 -2.7
2,947,178 - A4249_RS14555 0.22 -1.5
2,947,178 - A4249_RS14555 0.22 +2.1
2,947,178 - A4249_RS14555 0.22 -1.7
2,947,304 - A4249_RS14555 0.32 -0.0
2,947,540 + A4249_RS14555 0.51 -1.2
2,947,541 - A4249_RS14555 0.51 -0.9
2,947,541 - A4249_RS14555 0.51 -1.6
2,947,541 - A4249_RS14555 0.51 -2.1
2,947,577 - A4249_RS14555 0.54 +0.4
2,948,550 + A4249_RS14560 0.17 -1.1
2,948,550 + A4249_RS14560 0.17 -0.2
2,948,550 + A4249_RS14560 0.17 -0.1
2,948,551 - A4249_RS14560 0.17 -0.8
2,948,551 - A4249_RS14560 0.17 +0.1
2,948,551 - A4249_RS14560 0.17 -0.6
2,948,551 - A4249_RS14560 0.17 -0.2
2,948,551 - A4249_RS14560 0.17 -0.2
2,948,598 + A4249_RS14560 0.20 -0.5
2,948,598 + A4249_RS14560 0.20 +1.0
2,948,598 + A4249_RS14560 0.20 -0.8
2,948,598 + A4249_RS14560 0.20 +1.1
2,948,598 + A4249_RS14560 0.20 -1.3
2,948,598 + A4249_RS14560 0.20 -0.3
2,948,598 + A4249_RS14560 0.20 -0.1
2,948,598 + A4249_RS14560 0.20 +0.4
2,948,598 + A4249_RS14560 0.20 -1.9
2,948,598 + A4249_RS14560 0.20 +1.4
2,948,598 + A4249_RS14560 0.20 -0.5
2,948,598 + A4249_RS14560 0.20 +0.1
2,948,598 + A4249_RS14560 0.20 -0.3
2,948,598 + A4249_RS14560 0.20 -0.9
2,948,598 + A4249_RS14560 0.20 -0.5
2,948,598 + A4249_RS14560 0.20 -0.5
2,948,598 + A4249_RS14560 0.20 +1.3
2,948,598 + A4249_RS14560 0.20 -0.6
2,948,598 + A4249_RS14560 0.20 -1.9
2,948,598 + A4249_RS14560 0.20 -0.5
2,948,599 - A4249_RS14560 0.20 +0.3
2,948,599 - A4249_RS14560 0.20 +0.9
2,948,599 - A4249_RS14560 0.20 -0.6
2,948,599 - A4249_RS14560 0.20 +0.2
2,948,599 - A4249_RS14560 0.20 -0.2
2,948,599 - A4249_RS14560 0.20 +0.6
2,948,599 - A4249_RS14560 0.20 +1.1
2,948,599 - A4249_RS14560 0.20 +0.0
2,948,599 - A4249_RS14560 0.20 -0.5
2,948,599 - A4249_RS14560 0.20 +0.6
2,948,599 - A4249_RS14560 0.20 +0.8
2,948,599 - A4249_RS14560 0.20 -0.5
2,948,599 - A4249_RS14560 0.20 +0.3
2,948,599 - A4249_RS14560 0.20 -0.2
2,948,718 + A4249_RS14560 0.26 -0.4
2,948,718 + A4249_RS14560 0.26 -0.1
2,948,719 - A4249_RS14560 0.26 -0.2
2,948,719 - A4249_RS14560 0.26 -0.7
2,948,719 - A4249_RS14560 0.26 -1.6
2,948,719 - A4249_RS14560 0.26 +1.1
2,948,719 - A4249_RS14560 0.26 -1.3
2,948,719 - A4249_RS14560 0.26 -0.3
2,948,796 + A4249_RS14560 0.30 +0.5
2,948,796 + A4249_RS14560 0.30 +0.1
2,948,796 + A4249_RS14560 0.30 -0.7
2,948,797 - A4249_RS14560 0.30 -0.1
2,948,797 - A4249_RS14560 0.30 +0.2
2,948,797 - A4249_RS14560 0.30 +0.8
2,948,797 - A4249_RS14560 0.30 -0.6
2,948,797 - A4249_RS14560 0.30 +0.8
2,948,928 + A4249_RS14560 0.37 +0.4
2,948,928 + A4249_RS14560 0.37 -0.2
2,948,929 - A4249_RS14560 0.37 +0.0
2,948,929 - A4249_RS14560 0.37 -0.1
2,949,072 + A4249_RS14560 0.44 -0.1
2,949,072 + A4249_RS14560 0.44 -0.8
2,949,072 + A4249_RS14560 0.44 -0.0
2,949,072 + A4249_RS14560 0.44 -0.2
2,949,072 + A4249_RS14560 0.44 +0.5
2,949,073 - A4249_RS14560 0.44 +0.1
2,949,073 - A4249_RS14560 0.44 +0.6
2,949,073 - A4249_RS14560 0.44 +0.5
2,949,073 - A4249_RS14560 0.44 +0.2

Or see this region's nucleotide sequence