Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11770

Experiment: Hypoxanthine 0.7347 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS11760 and A4249_RS11765 are separated by 56 nucleotidesA4249_RS11765 and A4249_RS11770 are separated by 28 nucleotidesA4249_RS11770 and A4249_RS11775 are separated by 53 nucleotidesA4249_RS11775 and A4249_RS11780 are separated by 331 nucleotides A4249_RS11760: A4249_RS11760 - TolC family protein, at 2,363,041 to 2,364,294 _RS11760 A4249_RS11765: A4249_RS11765 - hypothetical protein, at 2,364,351 to 2,364,707 _RS11765 A4249_RS11770: A4249_RS11770 - cation transporter, at 2,364,736 to 2,365,404 _RS11770 A4249_RS11775: A4249_RS11775 - helix-turn-helix domain-containing protein, at 2,365,458 to 2,365,904 _RS11775 A4249_RS11780: A4249_RS11780 - hypothetical protein, at 2,366,236 to 2,366,601 _RS11780 Position (kb) 2364 2365 2366Strain fitness (log2 ratio) -1 0 1at 2363.870 kb on + strand, within A4249_RS11760at 2363.870 kb on + strand, within A4249_RS11760at 2363.870 kb on + strand, within A4249_RS11760at 2363.870 kb on + strand, within A4249_RS11760at 2363.871 kb on - strand, within A4249_RS11760at 2363.871 kb on - strand, within A4249_RS11760at 2364.050 kb on + strand, within A4249_RS11760at 2364.051 kb on - strand, within A4249_RS11760at 2364.128 kb on + strand, within A4249_RS11760at 2364.128 kb on + strand, within A4249_RS11760at 2364.128 kb on + strand, within A4249_RS11760at 2364.188 kb on + strandat 2364.188 kb on + strandat 2364.188 kb on + strandat 2364.188 kb on + strandat 2364.189 kb on - strandat 2364.189 kb on - strandat 2364.189 kb on - strandat 2364.189 kb on - strandat 2364.189 kb on - strandat 2364.189 kb on - strandat 2364.189 kb on - strandat 2364.707 kb on + strandat 2364.707 kb on + strandat 2364.707 kb on + strandat 2364.707 kb on + strandat 2364.707 kb on + strandat 2364.707 kb on + strandat 2364.708 kb on - strandat 2364.708 kb on - strandat 2364.708 kb on - strandat 2364.708 kb on - strandat 2364.708 kb on - strandat 2364.708 kb on - strandat 2364.708 kb on - strandat 2364.708 kb on - strandat 2364.725 kb on + strandat 2364.781 kb on - strandat 2364.995 kb on - strand, within A4249_RS11770at 2365.184 kb on + strand, within A4249_RS11770at 2365.185 kb on - strand, within A4249_RS11770at 2365.185 kb on - strand, within A4249_RS11770at 2365.284 kb on + strand, within A4249_RS11770at 2365.446 kb on + strandat 2365.446 kb on + strandat 2365.446 kb on + strandat 2365.447 kb on - strandat 2365.448 kb on + strandat 2365.448 kb on + strandat 2365.448 kb on + strandat 2365.448 kb on + strandat 2365.448 kb on + strandat 2365.448 kb on + strandat 2365.449 kb on - strandat 2365.449 kb on - strandat 2365.449 kb on - strandat 2365.449 kb on - strandat 2365.545 kb on + strand, within A4249_RS11775at 2365.546 kb on - strand, within A4249_RS11775at 2365.546 kb on - strand, within A4249_RS11775at 2365.546 kb on - strand, within A4249_RS11775at 2365.546 kb on - strand, within A4249_RS11775at 2365.602 kb on + strand, within A4249_RS11775at 2365.603 kb on - strand, within A4249_RS11775at 2365.603 kb on - strand, within A4249_RS11775at 2365.808 kb on + strand, within A4249_RS11775at 2365.808 kb on + strand, within A4249_RS11775at 2365.808 kb on + strand, within A4249_RS11775at 2365.809 kb on - strand, within A4249_RS11775at 2365.809 kb on - strand, within A4249_RS11775at 2366.000 kb on + strandat 2366.000 kb on + strandat 2366.000 kb on + strandat 2366.000 kb on + strandat 2366.000 kb on + strandat 2366.235 kb on + strandat 2366.235 kb on + strandat 2366.236 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
remove
2,363,870 + A4249_RS11760 0.66 -0.3
2,363,870 + A4249_RS11760 0.66 -0.3
2,363,870 + A4249_RS11760 0.66 +1.0
2,363,870 + A4249_RS11760 0.66 +0.9
2,363,871 - A4249_RS11760 0.66 +0.7
2,363,871 - A4249_RS11760 0.66 -0.6
2,364,050 + A4249_RS11760 0.80 +1.1
2,364,051 - A4249_RS11760 0.81 -0.3
2,364,128 + A4249_RS11760 0.87 -0.2
2,364,128 + A4249_RS11760 0.87 +0.3
2,364,128 + A4249_RS11760 0.87 -1.5
2,364,188 + -0.5
2,364,188 + -0.1
2,364,188 + +1.7
2,364,188 + -0.3
2,364,189 - +0.3
2,364,189 - +0.5
2,364,189 - -0.9
2,364,189 - +0.7
2,364,189 - -0.6
2,364,189 - +0.6
2,364,189 - +0.2
2,364,707 + -0.6
2,364,707 + +0.2
2,364,707 + -1.0
2,364,707 + -0.9
2,364,707 + -0.3
2,364,707 + -0.5
2,364,708 - -0.2
2,364,708 - -0.1
2,364,708 - +0.2
2,364,708 - +0.3
2,364,708 - -0.3
2,364,708 - -0.6
2,364,708 - -0.5
2,364,708 - -0.7
2,364,725 + -0.7
2,364,781 - -0.5
2,364,995 - A4249_RS11770 0.39 +0.2
2,365,184 + A4249_RS11770 0.67 +0.6
2,365,185 - A4249_RS11770 0.67 -1.6
2,365,185 - A4249_RS11770 0.67 +0.1
2,365,284 + A4249_RS11770 0.82 -0.1
2,365,446 + -1.6
2,365,446 + +0.2
2,365,446 + -0.0
2,365,447 - -1.5
2,365,448 + +0.3
2,365,448 + -0.1
2,365,448 + +0.8
2,365,448 + -0.7
2,365,448 + -0.6
2,365,448 + -1.3
2,365,449 - +0.5
2,365,449 - -0.0
2,365,449 - +1.2
2,365,449 - -0.3
2,365,545 + A4249_RS11775 0.19 -1.2
2,365,546 - A4249_RS11775 0.20 -0.4
2,365,546 - A4249_RS11775 0.20 -0.1
2,365,546 - A4249_RS11775 0.20 -0.7
2,365,546 - A4249_RS11775 0.20 +0.9
2,365,602 + A4249_RS11775 0.32 -0.3
2,365,603 - A4249_RS11775 0.32 +0.1
2,365,603 - A4249_RS11775 0.32 -0.4
2,365,808 + A4249_RS11775 0.78 -0.5
2,365,808 + A4249_RS11775 0.78 -0.2
2,365,808 + A4249_RS11775 0.78 +0.8
2,365,809 - A4249_RS11775 0.79 -1.2
2,365,809 - A4249_RS11775 0.79 -0.2
2,366,000 + +0.7
2,366,000 + -0.4
2,366,000 + -1.0
2,366,000 + -0.9
2,366,000 + -0.3
2,366,235 + +1.0
2,366,235 + -0.3
2,366,236 - -0.0

Or see this region's nucleotide sequence