Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11690

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11685 and A4249_RS16635 overlap by 4 nucleotidesA4249_RS16635 and A4249_RS11690 overlap by 4 nucleotidesA4249_RS11690 and A4249_RS16640 are separated by 483 nucleotides A4249_RS11685: A4249_RS11685 - PfkB family carbohydrate kinase, at 2,345,641 to 2,346,834 _RS11685 A4249_RS16635: A4249_RS16635 - hypothetical protein, at 2,346,831 to 2,347,097 _RS16635 A4249_RS11690: A4249_RS11690 - endonuclease III domain-containing protein, at 2,347,094 to 2,348,002 _RS11690 A4249_RS16640: A4249_RS16640 - lasso peptide biosynthesis B2 protein, at 2,348,486 to 2,349,580 _RS16640 Position (kb) 2347 2348 2349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2346.098 kb on + strand, within A4249_RS11685at 2346.098 kb on + strand, within A4249_RS11685at 2346.099 kb on - strand, within A4249_RS11685at 2346.099 kb on - strand, within A4249_RS11685at 2346.099 kb on - strand, within A4249_RS11685at 2346.099 kb on - strand, within A4249_RS11685at 2346.099 kb on - strand, within A4249_RS11685at 2346.101 kb on + strand, within A4249_RS11685at 2346.101 kb on + strand, within A4249_RS11685at 2346.101 kb on + strand, within A4249_RS11685at 2346.101 kb on + strand, within A4249_RS11685at 2346.102 kb on - strand, within A4249_RS11685at 2346.102 kb on - strand, within A4249_RS11685at 2346.102 kb on - strand, within A4249_RS11685at 2346.327 kb on + strand, within A4249_RS11685at 2346.388 kb on + strand, within A4249_RS11685at 2346.388 kb on + strand, within A4249_RS11685at 2346.388 kb on + strand, within A4249_RS11685at 2346.388 kb on + strand, within A4249_RS11685at 2346.389 kb on - strand, within A4249_RS11685at 2346.389 kb on - strand, within A4249_RS11685at 2346.389 kb on - strand, within A4249_RS11685at 2346.389 kb on - strand, within A4249_RS11685at 2346.389 kb on - strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.458 kb on + strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.459 kb on - strand, within A4249_RS11685at 2346.599 kb on + strand, within A4249_RS11685at 2346.599 kb on + strand, within A4249_RS11685at 2346.599 kb on + strand, within A4249_RS11685at 2346.599 kb on + strand, within A4249_RS11685at 2346.599 kb on + strand, within A4249_RS11685at 2346.600 kb on - strand, within A4249_RS11685at 2346.600 kb on - strand, within A4249_RS11685at 2346.600 kb on - strand, within A4249_RS11685at 2346.698 kb on + strand, within A4249_RS11685at 2346.698 kb on + strand, within A4249_RS11685at 2346.698 kb on + strand, within A4249_RS11685at 2346.698 kb on + strand, within A4249_RS11685at 2346.698 kb on + strand, within A4249_RS11685at 2346.698 kb on + strand, within A4249_RS11685at 2346.699 kb on - strand, within A4249_RS11685at 2346.699 kb on - strand, within A4249_RS11685at 2346.699 kb on - strand, within A4249_RS11685at 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.764 kb on + strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.765 kb on - strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.766 kb on + strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.767 kb on - strandat 2346.803 kb on + strandat 2346.804 kb on - strandat 2346.835 kb on - strandat 2346.835 kb on - strandat 2346.835 kb on - strandat 2346.856 kb on + strandat 2346.856 kb on + strandat 2346.856 kb on + strandat 2346.856 kb on + strandat 2346.856 kb on + strandat 2346.856 kb on + strandat 2346.856 kb on + strandat 2346.857 kb on - strandat 2346.857 kb on - strandat 2346.857 kb on - strandat 2346.857 kb on - strandat 2346.857 kb on - strandat 2346.857 kb on - strandat 2346.857 kb on - strandat 2346.857 kb on - strandat 2346.892 kb on + strand, within A4249_RS16635at 2346.892 kb on + strand, within A4249_RS16635at 2346.892 kb on + strand, within A4249_RS16635at 2346.893 kb on - strand, within A4249_RS16635at 2346.893 kb on - strand, within A4249_RS16635at 2346.893 kb on - strand, within A4249_RS16635at 2346.893 kb on - strand, within A4249_RS16635at 2346.926 kb on + strand, within A4249_RS16635at 2346.926 kb on + strand, within A4249_RS16635at 2346.926 kb on + strand, within A4249_RS16635at 2346.926 kb on + strand, within A4249_RS16635at 2346.927 kb on - strand, within A4249_RS16635at 2346.931 kb on + strand, within A4249_RS16635at 2346.931 kb on + strand, within A4249_RS16635at 2346.931 kb on + strand, within A4249_RS16635at 2346.931 kb on + strand, within A4249_RS16635at 2346.931 kb on + strand, within A4249_RS16635at 2346.931 kb on + strand, within A4249_RS16635at 2346.931 kb on + strand, within A4249_RS16635at 2346.932 kb on - strand, within A4249_RS16635at 2346.932 kb on - strand, within A4249_RS16635at 2346.987 kb on + strand, within A4249_RS16635at 2347.029 kb on - strand, within A4249_RS16635at 2347.073 kb on + strandat 2347.073 kb on + strandat 2347.074 kb on - strandat 2347.162 kb on + strandat 2347.162 kb on + strandat 2347.162 kb on + strandat 2347.162 kb on + strandat 2347.162 kb on + strandat 2347.163 kb on - strandat 2347.163 kb on - strandat 2347.163 kb on - strandat 2347.178 kb on + strandat 2347.193 kb on + strand, within A4249_RS11690at 2347.194 kb on - strand, within A4249_RS11690at 2347.266 kb on - strand, within A4249_RS11690at 2347.266 kb on - strand, within A4249_RS11690at 2347.266 kb on - strand, within A4249_RS11690at 2347.266 kb on - strand, within A4249_RS11690at 2347.383 kb on + strand, within A4249_RS11690at 2347.383 kb on + strand, within A4249_RS11690at 2347.384 kb on - strand, within A4249_RS11690at 2347.384 kb on - strand, within A4249_RS11690at 2347.384 kb on - strand, within A4249_RS11690at 2347.384 kb on - strand, within A4249_RS11690at 2347.384 kb on - strand, within A4249_RS11690at 2347.444 kb on + strand, within A4249_RS11690at 2347.444 kb on + strand, within A4249_RS11690at 2347.444 kb on + strand, within A4249_RS11690at 2347.444 kb on + strand, within A4249_RS11690at 2347.444 kb on + strand, within A4249_RS11690at 2347.445 kb on - strand, within A4249_RS11690at 2347.526 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.607 kb on + strand, within A4249_RS11690at 2347.608 kb on - strand, within A4249_RS11690at 2347.608 kb on - strand, within A4249_RS11690at 2347.611 kb on + strand, within A4249_RS11690at 2347.611 kb on + strand, within A4249_RS11690at 2347.611 kb on + strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.612 kb on - strand, within A4249_RS11690at 2347.659 kb on - strand, within A4249_RS11690at 2347.659 kb on - strand, within A4249_RS11690at 2348.020 kb on - strandat 2348.020 kb on - strandat 2348.036 kb on - strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.066 kb on + strandat 2348.067 kb on - strandat 2348.067 kb on - strandat 2348.085 kb on - strandat 2348.085 kb on - strandat 2348.165 kb on + strandat 2348.165 kb on + strandat 2348.166 kb on - strandat 2348.309 kb on + strandat 2348.310 kb on - strandat 2348.352 kb on + strandat 2348.353 kb on - strandat 2348.367 kb on + strandat 2348.368 kb on - strandat 2348.431 kb on + strandat 2348.431 kb on + strandat 2348.432 kb on - strandat 2348.432 kb on - strandat 2348.432 kb on - strandat 2348.432 kb on - strandat 2348.442 kb on + strandat 2348.443 kb on - strandat 2348.443 kb on - strandat 2348.700 kb on - strand, within A4249_RS16640at 2348.759 kb on + strand, within A4249_RS16640at 2348.760 kb on - strand, within A4249_RS16640at 2348.778 kb on + strand, within A4249_RS16640at 2348.778 kb on + strand, within A4249_RS16640at 2348.779 kb on - strand, within A4249_RS16640at 2348.817 kb on + strand, within A4249_RS16640at 2348.818 kb on - strand, within A4249_RS16640

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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2,346,098 + A4249_RS11685 0.38 -0.2
2,346,098 + A4249_RS11685 0.38 -1.0
2,346,099 - A4249_RS11685 0.38 -0.2
2,346,099 - A4249_RS11685 0.38 +0.1
2,346,099 - A4249_RS11685 0.38 -0.7
2,346,099 - A4249_RS11685 0.38 +0.2
2,346,099 - A4249_RS11685 0.38 -0.9
2,346,101 + A4249_RS11685 0.39 +1.3
2,346,101 + A4249_RS11685 0.39 -0.3
2,346,101 + A4249_RS11685 0.39 +1.0
2,346,101 + A4249_RS11685 0.39 -0.1
2,346,102 - A4249_RS11685 0.39 -1.6
2,346,102 - A4249_RS11685 0.39 +1.0
2,346,102 - A4249_RS11685 0.39 -0.9
2,346,327 + A4249_RS11685 0.57 +0.3
2,346,388 + A4249_RS11685 0.63 -0.1
2,346,388 + A4249_RS11685 0.63 +0.3
2,346,388 + A4249_RS11685 0.63 -0.0
2,346,388 + A4249_RS11685 0.63 +0.3
2,346,389 - A4249_RS11685 0.63 +1.1
2,346,389 - A4249_RS11685 0.63 -0.2
2,346,389 - A4249_RS11685 0.63 -0.0
2,346,389 - A4249_RS11685 0.63 -1.6
2,346,389 - A4249_RS11685 0.63 -0.3
2,346,458 + A4249_RS11685 0.68 +1.0
2,346,458 + A4249_RS11685 0.68 -0.2
2,346,458 + A4249_RS11685 0.68 -1.6
2,346,458 + A4249_RS11685 0.68 -0.0
2,346,458 + A4249_RS11685 0.68 -0.0
2,346,458 + A4249_RS11685 0.68 -0.2
2,346,458 + A4249_RS11685 0.68 -0.1
2,346,458 + A4249_RS11685 0.68 +0.0
2,346,458 + A4249_RS11685 0.68 +0.2
2,346,458 + A4249_RS11685 0.68 +1.4
2,346,458 + A4249_RS11685 0.68 +0.4
2,346,458 + A4249_RS11685 0.68 +0.6
2,346,458 + A4249_RS11685 0.68 +0.0
2,346,459 - A4249_RS11685 0.69 +0.1
2,346,459 - A4249_RS11685 0.69 +0.2
2,346,459 - A4249_RS11685 0.69 +0.5
2,346,459 - A4249_RS11685 0.69 -0.5
2,346,459 - A4249_RS11685 0.69 +0.6
2,346,459 - A4249_RS11685 0.69 -0.2
2,346,459 - A4249_RS11685 0.69 -1.1
2,346,459 - A4249_RS11685 0.69 -0.2
2,346,459 - A4249_RS11685 0.69 +0.9
2,346,459 - A4249_RS11685 0.69 -1.5
2,346,459 - A4249_RS11685 0.69 +0.9
2,346,459 - A4249_RS11685 0.69 +0.1
2,346,459 - A4249_RS11685 0.69 +1.4
2,346,599 + A4249_RS11685 0.80 +0.2
2,346,599 + A4249_RS11685 0.80 +0.2
2,346,599 + A4249_RS11685 0.80 -0.4
2,346,599 + A4249_RS11685 0.80 +1.6
2,346,599 + A4249_RS11685 0.80 -0.5
2,346,600 - A4249_RS11685 0.80 +0.1
2,346,600 - A4249_RS11685 0.80 +0.4
2,346,600 - A4249_RS11685 0.80 +0.1
2,346,698 + A4249_RS11685 0.89 -0.1
2,346,698 + A4249_RS11685 0.89 -0.7
2,346,698 + A4249_RS11685 0.89 -0.1
2,346,698 + A4249_RS11685 0.89 +0.3
2,346,698 + A4249_RS11685 0.89 -0.9
2,346,698 + A4249_RS11685 0.89 +0.3
2,346,699 - A4249_RS11685 0.89 -1.4
2,346,699 - A4249_RS11685 0.89 -2.5
2,346,699 - A4249_RS11685 0.89 +2.1
2,346,764 + -0.1
2,346,764 + +0.5
2,346,764 + +0.2
2,346,764 + -0.8
2,346,764 + -0.3
2,346,764 + -0.3
2,346,764 + -0.0
2,346,764 + +0.7
2,346,764 + +0.8
2,346,765 - -0.6
2,346,765 - -0.3
2,346,765 - -1.9
2,346,765 - +0.3
2,346,765 - -0.4
2,346,765 - -0.1
2,346,765 - +0.1
2,346,765 - -0.1
2,346,765 - -0.9
2,346,765 - +0.1
2,346,765 - +0.2
2,346,765 - +0.0
2,346,765 - +0.3
2,346,765 - -0.1
2,346,766 + +1.0
2,346,766 + -1.3
2,346,766 + +0.6
2,346,766 + -0.2
2,346,766 + -0.6
2,346,766 + +0.4
2,346,766 + -0.2
2,346,766 + -0.6
2,346,766 + -0.2
2,346,766 + +0.8
2,346,766 + -0.5
2,346,766 + +0.6
2,346,766 + -0.3
2,346,766 + -0.2
2,346,766 + -1.9
2,346,767 - -1.5
2,346,767 - +0.9
2,346,767 - -2.8
2,346,767 - +1.0
2,346,767 - -0.1
2,346,767 - -0.7
2,346,767 - -1.4
2,346,767 - +0.2
2,346,767 - +0.4
2,346,767 - +0.4
2,346,767 - +0.2
2,346,767 - +0.5
2,346,767 - -0.4
2,346,767 - -1.2
2,346,803 + +0.3
2,346,804 - -0.0
2,346,835 - -0.2
2,346,835 - -0.9
2,346,835 - -0.9
2,346,856 + -0.9
2,346,856 + -0.3
2,346,856 + +0.2
2,346,856 + -0.1
2,346,856 + -0.7
2,346,856 + -0.6
2,346,856 + -0.3
2,346,857 - -0.4
2,346,857 - -0.6
2,346,857 - -0.2
2,346,857 - +0.6
2,346,857 - -0.1
2,346,857 - -0.9
2,346,857 - -1.1
2,346,857 - -0.1
2,346,892 + A4249_RS16635 0.23 +0.1
2,346,892 + A4249_RS16635 0.23 -0.5
2,346,892 + A4249_RS16635 0.23 +0.2
2,346,893 - A4249_RS16635 0.23 -1.1
2,346,893 - A4249_RS16635 0.23 -0.1
2,346,893 - A4249_RS16635 0.23 -1.6
2,346,893 - A4249_RS16635 0.23 +1.3
2,346,926 + A4249_RS16635 0.36 -0.4
2,346,926 + A4249_RS16635 0.36 +0.1
2,346,926 + A4249_RS16635 0.36 +1.2
2,346,926 + A4249_RS16635 0.36 +0.1
2,346,927 - A4249_RS16635 0.36 -0.3
2,346,931 + A4249_RS16635 0.37 -0.4
2,346,931 + A4249_RS16635 0.37 +0.0
2,346,931 + A4249_RS16635 0.37 -0.0
2,346,931 + A4249_RS16635 0.37 -0.1
2,346,931 + A4249_RS16635 0.37 -0.7
2,346,931 + A4249_RS16635 0.37 -1.6
2,346,931 + A4249_RS16635 0.37 -2.1
2,346,932 - A4249_RS16635 0.38 -0.4
2,346,932 - A4249_RS16635 0.38 +0.4
2,346,987 + A4249_RS16635 0.58 -0.1
2,347,029 - A4249_RS16635 0.74 +0.5
2,347,073 + -0.2
2,347,073 + -0.2
2,347,074 - -0.3
2,347,162 + +0.1
2,347,162 + -1.3
2,347,162 + +0.5
2,347,162 + +0.6
2,347,162 + -0.3
2,347,163 - +0.3
2,347,163 - +1.3
2,347,163 - -2.1
2,347,178 + -0.7
2,347,193 + A4249_RS11690 0.11 -0.4
2,347,194 - A4249_RS11690 0.11 -0.3
2,347,266 - A4249_RS11690 0.19 +0.0
2,347,266 - A4249_RS11690 0.19 +1.1
2,347,266 - A4249_RS11690 0.19 -0.3
2,347,266 - A4249_RS11690 0.19 -0.2
2,347,383 + A4249_RS11690 0.32 -0.1
2,347,383 + A4249_RS11690 0.32 -0.4
2,347,384 - A4249_RS11690 0.32 +0.2
2,347,384 - A4249_RS11690 0.32 -0.6
2,347,384 - A4249_RS11690 0.32 -0.0
2,347,384 - A4249_RS11690 0.32 +0.7
2,347,384 - A4249_RS11690 0.32 -0.6
2,347,444 + A4249_RS11690 0.39 +0.0
2,347,444 + A4249_RS11690 0.39 +0.2
2,347,444 + A4249_RS11690 0.39 +0.0
2,347,444 + A4249_RS11690 0.39 +0.4
2,347,444 + A4249_RS11690 0.39 +0.1
2,347,445 - A4249_RS11690 0.39 +0.4
2,347,526 + A4249_RS11690 0.48 -0.9
2,347,607 + A4249_RS11690 0.56 -0.2
2,347,607 + A4249_RS11690 0.56 -0.4
2,347,607 + A4249_RS11690 0.56 +0.4
2,347,607 + A4249_RS11690 0.56 +2.3
2,347,607 + A4249_RS11690 0.56 +0.2
2,347,608 - A4249_RS11690 0.57 +0.6
2,347,608 - A4249_RS11690 0.57 +0.6
2,347,611 + A4249_RS11690 0.57 +0.4
2,347,611 + A4249_RS11690 0.57 +0.1
2,347,611 + A4249_RS11690 0.57 +0.3
2,347,612 - A4249_RS11690 0.57 +0.4
2,347,612 - A4249_RS11690 0.57 +0.5
2,347,612 - A4249_RS11690 0.57 -0.0
2,347,612 - A4249_RS11690 0.57 -0.1
2,347,612 - A4249_RS11690 0.57 -0.8
2,347,612 - A4249_RS11690 0.57 +0.6
2,347,612 - A4249_RS11690 0.57 -1.3
2,347,659 - A4249_RS11690 0.62 -0.3
2,347,659 - A4249_RS11690 0.62 -0.4
2,348,020 - +0.6
2,348,020 - -0.0
2,348,036 - +1.1
2,348,066 + -1.7
2,348,066 + -0.3
2,348,066 + +0.3
2,348,066 + +0.1
2,348,066 + +0.0
2,348,067 - -0.2
2,348,067 - +0.4
2,348,085 - -0.1
2,348,085 - -0.1
2,348,165 + -1.5
2,348,165 + -0.5
2,348,166 - +0.5
2,348,309 + +0.2
2,348,310 - +0.4
2,348,352 + +0.5
2,348,353 - +0.5
2,348,367 + +0.2
2,348,368 - -1.3
2,348,431 + +0.8
2,348,431 + -1.0
2,348,432 - -1.5
2,348,432 - -2.6
2,348,432 - +0.4
2,348,432 - +1.7
2,348,442 + +0.0
2,348,443 - +1.0
2,348,443 - -0.6
2,348,700 - A4249_RS16640 0.20 +1.4
2,348,759 + A4249_RS16640 0.25 +1.5
2,348,760 - A4249_RS16640 0.25 -0.5
2,348,778 + A4249_RS16640 0.27 -1.0
2,348,778 + A4249_RS16640 0.27 -1.5
2,348,779 - A4249_RS16640 0.27 +1.1
2,348,817 + A4249_RS16640 0.30 -1.4
2,348,818 - A4249_RS16640 0.30 +0.1

Or see this region's nucleotide sequence