Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10955

Experiment: Hypoxanthine 0.7347 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS10950 and A4249_RS16625 are separated by 129 nucleotidesA4249_RS16625 and A4249_RS10955 are separated by 189 nucleotidesA4249_RS10955 and A4249_RS10960 are separated by 52 nucleotidesA4249_RS10960 and A4249_RS10965 are separated by 134 nucleotidesA4249_RS10965 and A4249_RS10970 are separated by 112 nucleotides A4249_RS10950: A4249_RS10950 - DUF1345 domain-containing protein, at 2,199,446 to 2,200,117 _RS10950 A4249_RS16625: A4249_RS16625 - hypothetical protein, at 2,200,247 to 2,200,390 _RS16625 A4249_RS10955: A4249_RS10955 - DNA polymerase III subunit epsilon, at 2,200,580 to 2,201,242 _RS10955 A4249_RS10960: A4249_RS10960 - tRNA-Val, at 2,201,295 to 2,201,369 _RS10960 A4249_RS10965: A4249_RS10965 - response regulator, at 2,201,504 to 2,201,860 _RS10965 A4249_RS10970: A4249_RS10970 - N-formylglutamate amidohydrolase, at 2,201,973 to 2,202,797 _RS10970 Position (kb) 2200 2201 2202Strain fitness (log2 ratio) -2 -1 0 1at 2199.605 kb on + strand, within A4249_RS10950at 2199.605 kb on + strand, within A4249_RS10950at 2199.606 kb on - strand, within A4249_RS10950at 2199.606 kb on - strand, within A4249_RS10950at 2199.606 kb on - strand, within A4249_RS10950at 2199.606 kb on - strand, within A4249_RS10950at 2199.606 kb on - strand, within A4249_RS10950at 2199.618 kb on + strand, within A4249_RS10950at 2199.618 kb on + strand, within A4249_RS10950at 2199.618 kb on + strand, within A4249_RS10950at 2199.619 kb on - strand, within A4249_RS10950at 2199.619 kb on - strand, within A4249_RS10950at 2199.687 kb on + strand, within A4249_RS10950at 2199.687 kb on + strand, within A4249_RS10950at 2199.687 kb on + strand, within A4249_RS10950at 2199.687 kb on + strand, within A4249_RS10950at 2199.688 kb on - strand, within A4249_RS10950at 2199.688 kb on - strand, within A4249_RS10950at 2199.688 kb on - strand, within A4249_RS10950at 2199.688 kb on - strand, within A4249_RS10950at 2199.702 kb on + strand, within A4249_RS10950at 2199.703 kb on - strand, within A4249_RS10950at 2199.729 kb on + strand, within A4249_RS10950at 2199.729 kb on + strand, within A4249_RS10950at 2199.729 kb on + strand, within A4249_RS10950at 2199.729 kb on + strand, within A4249_RS10950at 2199.729 kb on + strand, within A4249_RS10950at 2199.730 kb on - strand, within A4249_RS10950at 2199.730 kb on - strand, within A4249_RS10950at 2199.730 kb on - strand, within A4249_RS10950at 2199.730 kb on - strand, within A4249_RS10950at 2199.730 kb on - strand, within A4249_RS10950at 2199.730 kb on - strand, within A4249_RS10950at 2200.172 kb on + strandat 2200.212 kb on + strandat 2200.212 kb on + strandat 2200.212 kb on + strandat 2200.212 kb on + strandat 2200.212 kb on + strandat 2200.212 kb on + strandat 2200.212 kb on + strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.213 kb on - strandat 2200.280 kb on + strand, within A4249_RS16625at 2200.280 kb on + strand, within A4249_RS16625at 2200.280 kb on + strand, within A4249_RS16625at 2200.280 kb on + strand, within A4249_RS16625at 2200.281 kb on - strand, within A4249_RS16625at 2200.281 kb on - strand, within A4249_RS16625at 2200.281 kb on - strand, within A4249_RS16625at 2200.636 kb on - strandat 2200.636 kb on - strandat 2200.713 kb on - strand, within A4249_RS10955at 2200.799 kb on + strand, within A4249_RS10955at 2200.800 kb on - strand, within A4249_RS10955at 2200.904 kb on + strand, within A4249_RS10955at 2200.904 kb on + strand, within A4249_RS10955at 2200.904 kb on + strand, within A4249_RS10955at 2200.904 kb on + strand, within A4249_RS10955at 2200.905 kb on - strand, within A4249_RS10955at 2200.905 kb on - strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.973 kb on + strand, within A4249_RS10955at 2200.974 kb on - strand, within A4249_RS10955at 2200.974 kb on - strand, within A4249_RS10955at 2200.974 kb on - strand, within A4249_RS10955at 2200.974 kb on - strand, within A4249_RS10955at 2200.974 kb on - strand, within A4249_RS10955at 2200.974 kb on - strand, within A4249_RS10955at 2200.974 kb on - strand, within A4249_RS10955at 2201.240 kb on + strandat 2201.725 kb on - strand, within A4249_RS10965at 2201.894 kb on - strandat 2201.908 kb on - strandat 2201.962 kb on + strandat 2201.962 kb on + strandat 2201.963 kb on - strandat 2202.070 kb on - strand, within A4249_RS10970at 2202.070 kb on - strand, within A4249_RS10970at 2202.207 kb on + strand, within A4249_RS10970at 2202.207 kb on + strand, within A4249_RS10970at 2202.207 kb on + strand, within A4249_RS10970at 2202.207 kb on + strand, within A4249_RS10970at 2202.207 kb on + strand, within A4249_RS10970at 2202.208 kb on - strand, within A4249_RS10970at 2202.208 kb on - strand, within A4249_RS10970at 2202.208 kb on - strand, within A4249_RS10970at 2202.208 kb on - strand, within A4249_RS10970at 2202.208 kb on - strand, within A4249_RS10970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
remove
2,199,605 + A4249_RS10950 0.24 +1.3
2,199,605 + A4249_RS10950 0.24 +0.9
2,199,606 - A4249_RS10950 0.24 +0.1
2,199,606 - A4249_RS10950 0.24 +1.0
2,199,606 - A4249_RS10950 0.24 +0.9
2,199,606 - A4249_RS10950 0.24 +0.1
2,199,606 - A4249_RS10950 0.24 -0.4
2,199,618 + A4249_RS10950 0.26 -0.3
2,199,618 + A4249_RS10950 0.26 +0.1
2,199,618 + A4249_RS10950 0.26 -0.5
2,199,619 - A4249_RS10950 0.26 +0.1
2,199,619 - A4249_RS10950 0.26 +0.3
2,199,687 + A4249_RS10950 0.36 -0.3
2,199,687 + A4249_RS10950 0.36 -0.3
2,199,687 + A4249_RS10950 0.36 -2.3
2,199,687 + A4249_RS10950 0.36 +0.7
2,199,688 - A4249_RS10950 0.36 +0.1
2,199,688 - A4249_RS10950 0.36 +0.8
2,199,688 - A4249_RS10950 0.36 -0.4
2,199,688 - A4249_RS10950 0.36 -0.9
2,199,702 + A4249_RS10950 0.38 -1.0
2,199,703 - A4249_RS10950 0.38 +1.5
2,199,729 + A4249_RS10950 0.42 +0.9
2,199,729 + A4249_RS10950 0.42 -0.5
2,199,729 + A4249_RS10950 0.42 -0.5
2,199,729 + A4249_RS10950 0.42 +0.3
2,199,729 + A4249_RS10950 0.42 +0.3
2,199,730 - A4249_RS10950 0.42 +0.9
2,199,730 - A4249_RS10950 0.42 -2.0
2,199,730 - A4249_RS10950 0.42 +0.8
2,199,730 - A4249_RS10950 0.42 +1.0
2,199,730 - A4249_RS10950 0.42 +1.4
2,199,730 - A4249_RS10950 0.42 +0.2
2,200,172 + -0.7
2,200,212 + +0.1
2,200,212 + -0.3
2,200,212 + -0.2
2,200,212 + +0.5
2,200,212 + -0.4
2,200,212 + -0.1
2,200,212 + -0.4
2,200,213 - +0.9
2,200,213 - +1.5
2,200,213 - +0.2
2,200,213 - +0.2
2,200,213 - +0.6
2,200,213 - +0.7
2,200,213 - +0.5
2,200,213 - -1.5
2,200,213 - +0.2
2,200,213 - -0.2
2,200,280 + A4249_RS16625 0.23 -0.3
2,200,280 + A4249_RS16625 0.23 +1.2
2,200,280 + A4249_RS16625 0.23 +0.0
2,200,280 + A4249_RS16625 0.23 +0.8
2,200,281 - A4249_RS16625 0.24 -0.4
2,200,281 - A4249_RS16625 0.24 +0.6
2,200,281 - A4249_RS16625 0.24 +0.7
2,200,636 - +0.5
2,200,636 - -2.4
2,200,713 - A4249_RS10955 0.20 +0.1
2,200,799 + A4249_RS10955 0.33 +0.9
2,200,800 - A4249_RS10955 0.33 +0.1
2,200,904 + A4249_RS10955 0.49 +0.2
2,200,904 + A4249_RS10955 0.49 -0.5
2,200,904 + A4249_RS10955 0.49 +0.6
2,200,904 + A4249_RS10955 0.49 +0.0
2,200,905 - A4249_RS10955 0.49 +0.5
2,200,905 - A4249_RS10955 0.49 +0.8
2,200,973 + A4249_RS10955 0.59 +0.9
2,200,973 + A4249_RS10955 0.59 -1.3
2,200,973 + A4249_RS10955 0.59 +0.1
2,200,973 + A4249_RS10955 0.59 -0.1
2,200,973 + A4249_RS10955 0.59 -2.1
2,200,973 + A4249_RS10955 0.59 +0.9
2,200,973 + A4249_RS10955 0.59 -0.2
2,200,973 + A4249_RS10955 0.59 +0.5
2,200,973 + A4249_RS10955 0.59 +0.2
2,200,974 - A4249_RS10955 0.59 +0.2
2,200,974 - A4249_RS10955 0.59 +0.4
2,200,974 - A4249_RS10955 0.59 +0.7
2,200,974 - A4249_RS10955 0.59 +0.4
2,200,974 - A4249_RS10955 0.59 -0.0
2,200,974 - A4249_RS10955 0.59 -0.4
2,200,974 - A4249_RS10955 0.59 +0.6
2,201,240 + -0.1
2,201,725 - A4249_RS10965 0.62 +0.1
2,201,894 - -0.4
2,201,908 - +0.9
2,201,962 + -0.4
2,201,962 + +0.6
2,201,963 - -1.5
2,202,070 - A4249_RS10970 0.12 +1.2
2,202,070 - A4249_RS10970 0.12 -1.3
2,202,207 + A4249_RS10970 0.28 +1.1
2,202,207 + A4249_RS10970 0.28 +0.0
2,202,207 + A4249_RS10970 0.28 -1.9
2,202,207 + A4249_RS10970 0.28 -0.6
2,202,207 + A4249_RS10970 0.28 -0.0
2,202,208 - A4249_RS10970 0.28 -0.0
2,202,208 - A4249_RS10970 0.28 -0.5
2,202,208 - A4249_RS10970 0.28 -0.2
2,202,208 - A4249_RS10970 0.28 +1.0
2,202,208 - A4249_RS10970 0.28 -0.1

Or see this region's nucleotide sequence