Experiment: Hypoxanthine 0.7347 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS10115 and A4249_RS16335 overlap by 11 nucleotides A4249_RS16335 and A4249_RS10120 overlap by 4 nucleotides A4249_RS10120 and A4249_RS10125 overlap by 4 nucleotides A4249_RS10125 and A4249_RS10130 overlap by 4 nucleotides A4249_RS10130 and A4249_RS10135 overlap by 4 nucleotides A4249_RS10135 and A4249_RS10140 overlap by 4 nucleotides A4249_RS10140 and A4249_RS10145 are separated by 203 nucleotides
A4249_RS10115: A4249_RS10115 - phage tail tape measure protein, at 2,033,022 to 2,033,546
_RS10115
A4249_RS16335: A4249_RS16335 - phage tail assembly chaperone, at 2,033,536 to 2,033,712
_RS16335
A4249_RS10120: A4249_RS10120 - GTA-gp10 family protein, at 2,033,709 to 2,033,987
_RS10120
A4249_RS10125: A4249_RS10125 - phage major tail protein, TP901-1 family, at 2,033,984 to 2,034,394
_RS10125
A4249_RS10130: A4249_RS10130 - DUF3168 domain-containing protein, at 2,034,391 to 2,034,804
_RS10130
A4249_RS10135: A4249_RS10135 - phage head-tail adapter protein, at 2,034,801 to 2,035,097
_RS10135
A4249_RS10140: A4249_RS10140 - head-tail connector protein, at 2,035,094 to 2,035,357
_RS10140
A4249_RS10145: A4249_RS10145 - phage major capsid protein, at 2,035,561 to 2,036,738
_RS10145
Position (kb)
2034
2035 Strain fitness (log2 ratio)
-1
0
1 at 2034.063 kb on + strand, within A4249_RS10125 at 2034.063 kb on + strand, within A4249_RS10125 at 2034.064 kb on - strand, within A4249_RS10125 at 2034.334 kb on + strand, within A4249_RS10125 at 2034.443 kb on + strand, within A4249_RS10130 at 2034.443 kb on + strand, within A4249_RS10130 at 2034.443 kb on + strand, within A4249_RS10130 at 2034.443 kb on + strand, within A4249_RS10130 at 2034.443 kb on + strand, within A4249_RS10130 at 2034.443 kb on + strand, within A4249_RS10130 at 2034.444 kb on - strand, within A4249_RS10130 at 2034.444 kb on - strand, within A4249_RS10130 at 2034.444 kb on - strand, within A4249_RS10130 at 2034.444 kb on - strand, within A4249_RS10130 at 2034.444 kb on - strand, within A4249_RS10130 at 2034.680 kb on + strand, within A4249_RS10130 at 2034.680 kb on + strand, within A4249_RS10130 at 2034.681 kb on - strand, within A4249_RS10130 at 2034.681 kb on - strand, within A4249_RS10130 at 2034.681 kb on - strand, within A4249_RS10130 at 2034.714 kb on - strand, within A4249_RS10130 at 2034.889 kb on - strand, within A4249_RS10135 at 2034.938 kb on + strand, within A4249_RS10135 at 2034.938 kb on + strand, within A4249_RS10135 at 2034.938 kb on + strand, within A4249_RS10135 at 2034.938 kb on + strand, within A4249_RS10135 at 2034.939 kb on - strand, within A4249_RS10135 at 2034.939 kb on - strand, within A4249_RS10135 at 2035.113 kb on + strand at 2035.168 kb on - strand, within A4249_RS10140 at 2035.286 kb on + strand, within A4249_RS10140 at 2035.286 kb on + strand, within A4249_RS10140 at 2035.286 kb on + strand, within A4249_RS10140 at 2035.286 kb on + strand, within A4249_RS10140 at 2035.286 kb on + strand, within A4249_RS10140 at 2035.286 kb on + strand, within A4249_RS10140 at 2035.287 kb on - strand, within A4249_RS10140 at 2035.287 kb on - strand, within A4249_RS10140 at 2035.287 kb on - strand, within A4249_RS10140 at 2035.287 kb on - strand, within A4249_RS10140 at 2035.287 kb on - strand, within A4249_RS10140 at 2035.468 kb on + strand at 2035.468 kb on + strand at 2035.562 kb on + strand at 2035.562 kb on + strand at 2035.562 kb on + strand at 2035.634 kb on + strand at 2035.634 kb on + strand at 2035.635 kb on - strand at 2035.646 kb on + strand at 2035.646 kb on + strand at 2035.646 kb on + strand at 2035.646 kb on + strand at 2035.646 kb on + strand at 2035.646 kb on + strand at 2035.646 kb on + strand at 2035.646 kb on + strand at 2035.647 kb on - strand at 2035.647 kb on - strand at 2035.647 kb on - strand at 2035.647 kb on - strand at 2035.706 kb on + strand, within A4249_RS10145 at 2035.706 kb on + strand, within A4249_RS10145 at 2035.707 kb on - strand, within A4249_RS10145
Per-strain Table
Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C) remove 2,034,063 + A4249_RS10125 0.19 -1.7 2,034,063 + A4249_RS10125 0.19 -1.4 2,034,064 - A4249_RS10125 0.19 +0.1 2,034,334 + A4249_RS10125 0.85 +0.3 2,034,443 + A4249_RS10130 0.13 -0.0 2,034,443 + A4249_RS10130 0.13 -0.2 2,034,443 + A4249_RS10130 0.13 +0.5 2,034,443 + A4249_RS10130 0.13 -0.8 2,034,443 + A4249_RS10130 0.13 +0.4 2,034,443 + A4249_RS10130 0.13 +0.5 2,034,444 - A4249_RS10130 0.13 -0.5 2,034,444 - A4249_RS10130 0.13 -0.4 2,034,444 - A4249_RS10130 0.13 -0.6 2,034,444 - A4249_RS10130 0.13 -0.2 2,034,444 - A4249_RS10130 0.13 -1.5 2,034,680 + A4249_RS10130 0.70 +1.0 2,034,680 + A4249_RS10130 0.70 -0.1 2,034,681 - A4249_RS10130 0.70 +1.4 2,034,681 - A4249_RS10130 0.70 +0.7 2,034,681 - A4249_RS10130 0.70 +0.1 2,034,714 - A4249_RS10130 0.78 +1.4 2,034,889 - A4249_RS10135 0.30 -0.4 2,034,938 + A4249_RS10135 0.46 +0.2 2,034,938 + A4249_RS10135 0.46 -0.6 2,034,938 + A4249_RS10135 0.46 -0.2 2,034,938 + A4249_RS10135 0.46 +0.3 2,034,939 - A4249_RS10135 0.46 -0.2 2,034,939 - A4249_RS10135 0.46 +0.6 2,035,113 + -1.3 2,035,168 - A4249_RS10140 0.28 -0.0 2,035,286 + A4249_RS10140 0.73 -0.5 2,035,286 + A4249_RS10140 0.73 +0.1 2,035,286 + A4249_RS10140 0.73 -1.1 2,035,286 + A4249_RS10140 0.73 +0.8 2,035,286 + A4249_RS10140 0.73 -0.3 2,035,286 + A4249_RS10140 0.73 -0.6 2,035,287 - A4249_RS10140 0.73 -0.1 2,035,287 - A4249_RS10140 0.73 +0.5 2,035,287 - A4249_RS10140 0.73 +0.2 2,035,287 - A4249_RS10140 0.73 +0.5 2,035,287 - A4249_RS10140 0.73 +0.8 2,035,468 + -0.7 2,035,468 + +0.4 2,035,562 + -0.8 2,035,562 + -0.9 2,035,562 + +0.1 2,035,634 + -1.2 2,035,634 + +0.3 2,035,635 - -0.3 2,035,646 + +0.9 2,035,646 + -0.3 2,035,646 + +1.2 2,035,646 + -0.6 2,035,646 + +0.1 2,035,646 + -0.0 2,035,646 + -0.4 2,035,646 + +0.4 2,035,647 - +1.1 2,035,647 - +0.2 2,035,647 - -0.1 2,035,647 - +0.0 2,035,706 + A4249_RS10145 0.12 -0.3 2,035,706 + A4249_RS10145 0.12 +1.4 2,035,707 - A4249_RS10145 0.12 -1.4
Or see this region's nucleotide sequence