Experiment: Hypoxanthine 0.7347 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09530 and A4249_RS09535 are separated by 21 nucleotides A4249_RS09535 and A4249_RS09540 are separated by 85 nucleotides A4249_RS09540 and A4249_RS09545 are separated by 121 nucleotides
A4249_RS09530: A4249_RS09530 - TonB-dependent receptor, at 1,902,285 to 1,904,660
_RS09530
A4249_RS09535: A4249_RS09535 - FecR domain-containing protein, at 1,904,682 to 1,905,653
_RS09535
A4249_RS09540: A4249_RS09540 - sigma-70 family RNA polymerase sigma factor, at 1,905,739 to 1,906,302
_RS09540
A4249_RS09545: A4249_RS09545 - thermostable hemolysin, at 1,906,424 to 1,907,110
_RS09545
Position (kb)
1904
1905
1906 Strain fitness (log2 ratio)
-2
-1
0
1 at 1903.709 kb on + strand, within A4249_RS09530 at 1903.710 kb on - strand, within A4249_RS09530 at 1903.710 kb on - strand, within A4249_RS09530 at 1903.741 kb on + strand, within A4249_RS09530 at 1903.742 kb on - strand, within A4249_RS09530 at 1903.742 kb on - strand, within A4249_RS09530 at 1903.742 kb on - strand, within A4249_RS09530 at 1903.742 kb on - strand, within A4249_RS09530 at 1903.762 kb on + strand, within A4249_RS09530 at 1903.879 kb on + strand, within A4249_RS09530 at 1903.879 kb on + strand, within A4249_RS09530 at 1903.880 kb on - strand, within A4249_RS09530 at 1903.880 kb on - strand, within A4249_RS09530 at 1903.945 kb on + strand, within A4249_RS09530 at 1904.023 kb on + strand, within A4249_RS09530 at 1904.023 kb on + strand, within A4249_RS09530 at 1904.024 kb on - strand, within A4249_RS09530 at 1904.024 kb on - strand, within A4249_RS09530 at 1904.047 kb on + strand, within A4249_RS09530 at 1904.047 kb on + strand, within A4249_RS09530 at 1904.047 kb on + strand, within A4249_RS09530 at 1904.048 kb on - strand, within A4249_RS09530 at 1904.048 kb on - strand, within A4249_RS09530 at 1904.048 kb on - strand, within A4249_RS09530 at 1904.048 kb on - strand, within A4249_RS09530 at 1904.048 kb on - strand, within A4249_RS09530 at 1904.048 kb on - strand, within A4249_RS09530 at 1904.048 kb on - strand, within A4249_RS09530 at 1904.050 kb on - strand, within A4249_RS09530 at 1904.175 kb on + strand, within A4249_RS09530 at 1904.175 kb on + strand, within A4249_RS09530 at 1904.176 kb on - strand, within A4249_RS09530 at 1904.176 kb on - strand, within A4249_RS09530 at 1904.231 kb on - strand, within A4249_RS09530 at 1904.374 kb on + strand, within A4249_RS09530 at 1904.656 kb on - strand at 1904.656 kb on - strand at 1904.694 kb on + strand at 1904.694 kb on + strand at 1904.887 kb on + strand, within A4249_RS09535 at 1904.887 kb on + strand, within A4249_RS09535 at 1904.888 kb on - strand, within A4249_RS09535 at 1904.888 kb on - strand, within A4249_RS09535 at 1905.304 kb on + strand, within A4249_RS09535 at 1905.304 kb on + strand, within A4249_RS09535 at 1905.304 kb on + strand, within A4249_RS09535 at 1905.304 kb on + strand, within A4249_RS09535 at 1905.305 kb on - strand, within A4249_RS09535 at 1905.305 kb on - strand, within A4249_RS09535 at 1905.305 kb on - strand, within A4249_RS09535 at 1905.305 kb on - strand, within A4249_RS09535 at 1905.728 kb on - strand at 1905.788 kb on + strand at 1905.788 kb on + strand at 1905.788 kb on + strand at 1905.788 kb on + strand at 1905.789 kb on - strand at 1905.789 kb on - strand at 1906.563 kb on - strand, within A4249_RS09545 at 1906.563 kb on - strand, within A4249_RS09545 at 1906.574 kb on + strand, within A4249_RS09545 at 1906.574 kb on + strand, within A4249_RS09545 at 1906.575 kb on - strand, within A4249_RS09545 at 1906.575 kb on - strand, within A4249_RS09545 at 1906.575 kb on - strand, within A4249_RS09545 at 1906.575 kb on - strand, within A4249_RS09545 at 1906.575 kb on - strand, within A4249_RS09545 at 1906.575 kb on - strand, within A4249_RS09545 at 1906.640 kb on + strand, within A4249_RS09545 at 1906.640 kb on + strand, within A4249_RS09545 at 1906.640 kb on + strand, within A4249_RS09545 at 1906.640 kb on + strand, within A4249_RS09545 at 1906.640 kb on + strand, within A4249_RS09545 at 1906.641 kb on - strand, within A4249_RS09545 at 1906.641 kb on - strand, within A4249_RS09545
Per-strain Table
Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C) remove 1,903,709 + A4249_RS09530 0.60 -0.7 1,903,710 - A4249_RS09530 0.60 -0.3 1,903,710 - A4249_RS09530 0.60 -1.2 1,903,741 + A4249_RS09530 0.61 -0.5 1,903,742 - A4249_RS09530 0.61 +0.5 1,903,742 - A4249_RS09530 0.61 -0.3 1,903,742 - A4249_RS09530 0.61 +0.6 1,903,742 - A4249_RS09530 0.61 -0.8 1,903,762 + A4249_RS09530 0.62 -0.3 1,903,879 + A4249_RS09530 0.67 -1.2 1,903,879 + A4249_RS09530 0.67 -0.3 1,903,880 - A4249_RS09530 0.67 +0.1 1,903,880 - A4249_RS09530 0.67 -1.0 1,903,945 + A4249_RS09530 0.70 +0.1 1,904,023 + A4249_RS09530 0.73 -0.8 1,904,023 + A4249_RS09530 0.73 -0.4 1,904,024 - A4249_RS09530 0.73 +0.4 1,904,024 - A4249_RS09530 0.73 -0.2 1,904,047 + A4249_RS09530 0.74 -0.2 1,904,047 + A4249_RS09530 0.74 -1.8 1,904,047 + A4249_RS09530 0.74 -0.8 1,904,048 - A4249_RS09530 0.74 +0.2 1,904,048 - A4249_RS09530 0.74 -0.1 1,904,048 - A4249_RS09530 0.74 -0.7 1,904,048 - A4249_RS09530 0.74 -0.7 1,904,048 - A4249_RS09530 0.74 -0.6 1,904,048 - A4249_RS09530 0.74 +0.2 1,904,048 - A4249_RS09530 0.74 -0.1 1,904,050 - A4249_RS09530 0.74 -0.4 1,904,175 + A4249_RS09530 0.80 -2.4 1,904,175 + A4249_RS09530 0.80 +0.1 1,904,176 - A4249_RS09530 0.80 +1.0 1,904,176 - A4249_RS09530 0.80 -0.3 1,904,231 - A4249_RS09530 0.82 +0.1 1,904,374 + A4249_RS09530 0.88 -1.5 1,904,656 - +0.5 1,904,656 - -2.4 1,904,694 + -0.3 1,904,694 + +0.3 1,904,887 + A4249_RS09535 0.21 +0.4 1,904,887 + A4249_RS09535 0.21 -0.1 1,904,888 - A4249_RS09535 0.21 +0.8 1,904,888 - A4249_RS09535 0.21 -2.1 1,905,304 + A4249_RS09535 0.64 -1.2 1,905,304 + A4249_RS09535 0.64 +0.1 1,905,304 + A4249_RS09535 0.64 +0.7 1,905,304 + A4249_RS09535 0.64 +1.3 1,905,305 - A4249_RS09535 0.64 +0.1 1,905,305 - A4249_RS09535 0.64 +0.1 1,905,305 - A4249_RS09535 0.64 +1.1 1,905,305 - A4249_RS09535 0.64 -0.5 1,905,728 - -0.2 1,905,788 + -0.1 1,905,788 + +0.4 1,905,788 + +0.2 1,905,788 + +1.0 1,905,789 - -0.1 1,905,789 - -0.5 1,906,563 - A4249_RS09545 0.20 -1.2 1,906,563 - A4249_RS09545 0.20 +0.6 1,906,574 + A4249_RS09545 0.22 -0.7 1,906,574 + A4249_RS09545 0.22 +0.6 1,906,575 - A4249_RS09545 0.22 -0.1 1,906,575 - A4249_RS09545 0.22 -0.2 1,906,575 - A4249_RS09545 0.22 +0.2 1,906,575 - A4249_RS09545 0.22 -0.3 1,906,575 - A4249_RS09545 0.22 -0.6 1,906,575 - A4249_RS09545 0.22 +0.1 1,906,640 + A4249_RS09545 0.31 -0.3 1,906,640 + A4249_RS09545 0.31 +1.4 1,906,640 + A4249_RS09545 0.31 +0.3 1,906,640 + A4249_RS09545 0.31 -0.1 1,906,640 + A4249_RS09545 0.31 -0.5 1,906,641 - A4249_RS09545 0.32 +0.7 1,906,641 - A4249_RS09545 0.32 -0.6
Or see this region's nucleotide sequence