Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09535

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09530 and A4249_RS09535 are separated by 21 nucleotidesA4249_RS09535 and A4249_RS09540 are separated by 85 nucleotidesA4249_RS09540 and A4249_RS09545 are separated by 121 nucleotides A4249_RS09530: A4249_RS09530 - TonB-dependent receptor, at 1,902,285 to 1,904,660 _RS09530 A4249_RS09535: A4249_RS09535 - FecR domain-containing protein, at 1,904,682 to 1,905,653 _RS09535 A4249_RS09540: A4249_RS09540 - sigma-70 family RNA polymerase sigma factor, at 1,905,739 to 1,906,302 _RS09540 A4249_RS09545: A4249_RS09545 - thermostable hemolysin, at 1,906,424 to 1,907,110 _RS09545 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -2 -1 0 1at 1903.709 kb on + strand, within A4249_RS09530at 1903.710 kb on - strand, within A4249_RS09530at 1903.710 kb on - strand, within A4249_RS09530at 1903.741 kb on + strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.742 kb on - strand, within A4249_RS09530at 1903.762 kb on + strand, within A4249_RS09530at 1903.879 kb on + strand, within A4249_RS09530at 1903.879 kb on + strand, within A4249_RS09530at 1903.880 kb on - strand, within A4249_RS09530at 1903.880 kb on - strand, within A4249_RS09530at 1903.945 kb on + strand, within A4249_RS09530at 1904.023 kb on + strand, within A4249_RS09530at 1904.023 kb on + strand, within A4249_RS09530at 1904.024 kb on - strand, within A4249_RS09530at 1904.024 kb on - strand, within A4249_RS09530at 1904.047 kb on + strand, within A4249_RS09530at 1904.047 kb on + strand, within A4249_RS09530at 1904.047 kb on + strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.048 kb on - strand, within A4249_RS09530at 1904.050 kb on - strand, within A4249_RS09530at 1904.175 kb on + strand, within A4249_RS09530at 1904.175 kb on + strand, within A4249_RS09530at 1904.176 kb on - strand, within A4249_RS09530at 1904.176 kb on - strand, within A4249_RS09530at 1904.231 kb on - strand, within A4249_RS09530at 1904.374 kb on + strand, within A4249_RS09530at 1904.656 kb on - strandat 1904.656 kb on - strandat 1904.694 kb on + strandat 1904.694 kb on + strandat 1904.887 kb on + strand, within A4249_RS09535at 1904.887 kb on + strand, within A4249_RS09535at 1904.888 kb on - strand, within A4249_RS09535at 1904.888 kb on - strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.304 kb on + strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.305 kb on - strand, within A4249_RS09535at 1905.728 kb on - strandat 1905.788 kb on + strandat 1905.788 kb on + strandat 1905.788 kb on + strandat 1905.788 kb on + strandat 1905.789 kb on - strandat 1905.789 kb on - strandat 1906.563 kb on - strand, within A4249_RS09545at 1906.563 kb on - strand, within A4249_RS09545at 1906.574 kb on + strand, within A4249_RS09545at 1906.574 kb on + strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.575 kb on - strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.640 kb on + strand, within A4249_RS09545at 1906.641 kb on - strand, within A4249_RS09545at 1906.641 kb on - strand, within A4249_RS09545

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,903,709 + A4249_RS09530 0.60 -0.7
1,903,710 - A4249_RS09530 0.60 -0.3
1,903,710 - A4249_RS09530 0.60 -1.2
1,903,741 + A4249_RS09530 0.61 -0.5
1,903,742 - A4249_RS09530 0.61 +0.5
1,903,742 - A4249_RS09530 0.61 -0.3
1,903,742 - A4249_RS09530 0.61 +0.6
1,903,742 - A4249_RS09530 0.61 -0.8
1,903,762 + A4249_RS09530 0.62 -0.3
1,903,879 + A4249_RS09530 0.67 -1.2
1,903,879 + A4249_RS09530 0.67 -0.3
1,903,880 - A4249_RS09530 0.67 +0.1
1,903,880 - A4249_RS09530 0.67 -1.0
1,903,945 + A4249_RS09530 0.70 +0.1
1,904,023 + A4249_RS09530 0.73 -0.8
1,904,023 + A4249_RS09530 0.73 -0.4
1,904,024 - A4249_RS09530 0.73 +0.4
1,904,024 - A4249_RS09530 0.73 -0.2
1,904,047 + A4249_RS09530 0.74 -0.2
1,904,047 + A4249_RS09530 0.74 -1.8
1,904,047 + A4249_RS09530 0.74 -0.8
1,904,048 - A4249_RS09530 0.74 +0.2
1,904,048 - A4249_RS09530 0.74 -0.1
1,904,048 - A4249_RS09530 0.74 -0.7
1,904,048 - A4249_RS09530 0.74 -0.7
1,904,048 - A4249_RS09530 0.74 -0.6
1,904,048 - A4249_RS09530 0.74 +0.2
1,904,048 - A4249_RS09530 0.74 -0.1
1,904,050 - A4249_RS09530 0.74 -0.4
1,904,175 + A4249_RS09530 0.80 -2.4
1,904,175 + A4249_RS09530 0.80 +0.1
1,904,176 - A4249_RS09530 0.80 +1.0
1,904,176 - A4249_RS09530 0.80 -0.3
1,904,231 - A4249_RS09530 0.82 +0.1
1,904,374 + A4249_RS09530 0.88 -1.5
1,904,656 - +0.5
1,904,656 - -2.4
1,904,694 + -0.3
1,904,694 + +0.3
1,904,887 + A4249_RS09535 0.21 +0.4
1,904,887 + A4249_RS09535 0.21 -0.1
1,904,888 - A4249_RS09535 0.21 +0.8
1,904,888 - A4249_RS09535 0.21 -2.1
1,905,304 + A4249_RS09535 0.64 -1.2
1,905,304 + A4249_RS09535 0.64 +0.1
1,905,304 + A4249_RS09535 0.64 +0.7
1,905,304 + A4249_RS09535 0.64 +1.3
1,905,305 - A4249_RS09535 0.64 +0.1
1,905,305 - A4249_RS09535 0.64 +0.1
1,905,305 - A4249_RS09535 0.64 +1.1
1,905,305 - A4249_RS09535 0.64 -0.5
1,905,728 - -0.2
1,905,788 + -0.1
1,905,788 + +0.4
1,905,788 + +0.2
1,905,788 + +1.0
1,905,789 - -0.1
1,905,789 - -0.5
1,906,563 - A4249_RS09545 0.20 -1.2
1,906,563 - A4249_RS09545 0.20 +0.6
1,906,574 + A4249_RS09545 0.22 -0.7
1,906,574 + A4249_RS09545 0.22 +0.6
1,906,575 - A4249_RS09545 0.22 -0.1
1,906,575 - A4249_RS09545 0.22 -0.2
1,906,575 - A4249_RS09545 0.22 +0.2
1,906,575 - A4249_RS09545 0.22 -0.3
1,906,575 - A4249_RS09545 0.22 -0.6
1,906,575 - A4249_RS09545 0.22 +0.1
1,906,640 + A4249_RS09545 0.31 -0.3
1,906,640 + A4249_RS09545 0.31 +1.4
1,906,640 + A4249_RS09545 0.31 +0.3
1,906,640 + A4249_RS09545 0.31 -0.1
1,906,640 + A4249_RS09545 0.31 -0.5
1,906,641 - A4249_RS09545 0.32 +0.7
1,906,641 - A4249_RS09545 0.32 -0.6

Or see this region's nucleotide sequence