Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07235

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07225 and A4249_RS07230 overlap by 4 nucleotidesA4249_RS07230 and A4249_RS07235 overlap by 4 nucleotidesA4249_RS07235 and A4249_RS07240 are separated by 172 nucleotidesA4249_RS07240 and A4249_RS07245 overlap by 4 nucleotides A4249_RS07225: A4249_RS07225 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 1,446,850 to 1,448,202 _RS07225 A4249_RS07230: A4249_RS07230 - ribose-5-phosphate isomerase RpiA, at 1,448,199 to 1,448,882 _RS07230 A4249_RS07235: A4249_RS07235 - sugar transferase, at 1,448,879 to 1,449,448 _RS07235 A4249_RS07240: A4249_RS07240 - hypothetical protein, at 1,449,621 to 1,450,118 _RS07240 A4249_RS07245: A4249_RS07245 - M28 family peptidase, at 1,450,115 to 1,451,071 _RS07245 Position (kb) 1448 1449 1450Strain fitness (log2 ratio) -1 0 1 2at 1448.881 kb on - strandat 1448.881 kb on - strandat 1448.937 kb on + strand, within A4249_RS07235at 1448.937 kb on + strand, within A4249_RS07235at 1448.938 kb on - strand, within A4249_RS07235at 1448.938 kb on - strand, within A4249_RS07235at 1449.057 kb on + strand, within A4249_RS07235at 1449.057 kb on + strand, within A4249_RS07235at 1449.058 kb on - strand, within A4249_RS07235at 1449.314 kb on + strand, within A4249_RS07235at 1449.314 kb on + strand, within A4249_RS07235at 1449.315 kb on - strand, within A4249_RS07235at 1449.315 kb on - strand, within A4249_RS07235at 1449.315 kb on - strand, within A4249_RS07235at 1449.820 kb on + strand, within A4249_RS07240at 1449.820 kb on + strand, within A4249_RS07240at 1449.820 kb on + strand, within A4249_RS07240at 1449.820 kb on + strand, within A4249_RS07240at 1449.820 kb on + strand, within A4249_RS07240at 1449.820 kb on + strand, within A4249_RS07240at 1449.821 kb on - strand, within A4249_RS07240at 1449.821 kb on - strand, within A4249_RS07240at 1449.821 kb on - strand, within A4249_RS07240at 1449.992 kb on + strand, within A4249_RS07240at 1449.993 kb on - strand, within A4249_RS07240at 1450.002 kb on + strand, within A4249_RS07240at 1450.002 kb on + strand, within A4249_RS07240at 1450.003 kb on - strand, within A4249_RS07240at 1450.003 kb on - strand, within A4249_RS07240at 1450.071 kb on + strandat 1450.072 kb on - strandat 1450.072 kb on - strandat 1450.225 kb on - strand, within A4249_RS07245at 1450.225 kb on - strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.236 kb on + strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.237 kb on - strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.251 kb on + strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.252 kb on - strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.410 kb on + strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.411 kb on - strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.427 kb on + strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245at 1450.428 kb on - strand, within A4249_RS07245

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,448,881 - +0.0
1,448,881 - +1.0
1,448,937 + A4249_RS07235 0.10 +0.0
1,448,937 + A4249_RS07235 0.10 +0.5
1,448,938 - A4249_RS07235 0.10 -0.1
1,448,938 - A4249_RS07235 0.10 +0.2
1,449,057 + A4249_RS07235 0.31 +1.5
1,449,057 + A4249_RS07235 0.31 -0.0
1,449,058 - A4249_RS07235 0.31 -0.6
1,449,314 + A4249_RS07235 0.76 -0.9
1,449,314 + A4249_RS07235 0.76 -0.8
1,449,315 - A4249_RS07235 0.76 -0.9
1,449,315 - A4249_RS07235 0.76 -0.4
1,449,315 - A4249_RS07235 0.76 +0.4
1,449,820 + A4249_RS07240 0.40 -0.0
1,449,820 + A4249_RS07240 0.40 -0.9
1,449,820 + A4249_RS07240 0.40 -0.1
1,449,820 + A4249_RS07240 0.40 +0.2
1,449,820 + A4249_RS07240 0.40 -0.2
1,449,820 + A4249_RS07240 0.40 +0.7
1,449,821 - A4249_RS07240 0.40 -1.6
1,449,821 - A4249_RS07240 0.40 +0.6
1,449,821 - A4249_RS07240 0.40 +0.1
1,449,992 + A4249_RS07240 0.74 +0.5
1,449,993 - A4249_RS07240 0.75 +0.2
1,450,002 + A4249_RS07240 0.77 +0.4
1,450,002 + A4249_RS07240 0.77 +0.4
1,450,003 - A4249_RS07240 0.77 +1.4
1,450,003 - A4249_RS07240 0.77 -0.6
1,450,071 + +0.5
1,450,072 - -0.5
1,450,072 - -1.0
1,450,225 - A4249_RS07245 0.11 -0.0
1,450,225 - A4249_RS07245 0.11 +0.2
1,450,236 + A4249_RS07245 0.13 -0.0
1,450,236 + A4249_RS07245 0.13 -0.7
1,450,236 + A4249_RS07245 0.13 +0.3
1,450,236 + A4249_RS07245 0.13 -1.4
1,450,237 - A4249_RS07245 0.13 -0.5
1,450,237 - A4249_RS07245 0.13 +0.1
1,450,237 - A4249_RS07245 0.13 +0.0
1,450,237 - A4249_RS07245 0.13 -1.2
1,450,237 - A4249_RS07245 0.13 +0.3
1,450,251 + A4249_RS07245 0.14 -0.0
1,450,251 + A4249_RS07245 0.14 +0.3
1,450,251 + A4249_RS07245 0.14 -0.1
1,450,251 + A4249_RS07245 0.14 +0.5
1,450,251 + A4249_RS07245 0.14 -0.4
1,450,251 + A4249_RS07245 0.14 -1.0
1,450,252 - A4249_RS07245 0.14 -0.0
1,450,252 - A4249_RS07245 0.14 +0.0
1,450,252 - A4249_RS07245 0.14 -0.8
1,450,252 - A4249_RS07245 0.14 -0.6
1,450,252 - A4249_RS07245 0.14 -0.1
1,450,252 - A4249_RS07245 0.14 +0.1
1,450,252 - A4249_RS07245 0.14 -1.3
1,450,410 + A4249_RS07245 0.31 -0.4
1,450,410 + A4249_RS07245 0.31 +0.4
1,450,410 + A4249_RS07245 0.31 +1.6
1,450,410 + A4249_RS07245 0.31 +2.7
1,450,410 + A4249_RS07245 0.31 -0.8
1,450,410 + A4249_RS07245 0.31 -0.1
1,450,410 + A4249_RS07245 0.31 +0.7
1,450,411 - A4249_RS07245 0.31 -0.1
1,450,411 - A4249_RS07245 0.31 -0.2
1,450,411 - A4249_RS07245 0.31 +0.3
1,450,411 - A4249_RS07245 0.31 +1.2
1,450,411 - A4249_RS07245 0.31 +1.3
1,450,411 - A4249_RS07245 0.31 -0.4
1,450,411 - A4249_RS07245 0.31 -0.7
1,450,411 - A4249_RS07245 0.31 -0.4
1,450,411 - A4249_RS07245 0.31 +1.2
1,450,411 - A4249_RS07245 0.31 +0.4
1,450,427 + A4249_RS07245 0.33 -0.2
1,450,427 + A4249_RS07245 0.33 +0.3
1,450,427 + A4249_RS07245 0.33 -0.2
1,450,427 + A4249_RS07245 0.33 +0.4
1,450,427 + A4249_RS07245 0.33 -0.3
1,450,428 - A4249_RS07245 0.33 -1.1
1,450,428 - A4249_RS07245 0.33 +0.0
1,450,428 - A4249_RS07245 0.33 -0.5
1,450,428 - A4249_RS07245 0.33 +1.2
1,450,428 - A4249_RS07245 0.33 -1.1
1,450,428 - A4249_RS07245 0.33 -0.8
1,450,428 - A4249_RS07245 0.33 -0.1
1,450,428 - A4249_RS07245 0.33 +0.1
1,450,428 - A4249_RS07245 0.33 +1.0
1,450,428 - A4249_RS07245 0.33 -0.2

Or see this region's nucleotide sequence