Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07005

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06990 and A4249_RS06995 are separated by 3 nucleotidesA4249_RS06995 and A4249_RS07000 overlap by 1 nucleotidesA4249_RS07000 and A4249_RS07005 overlap by 4 nucleotidesA4249_RS07005 and A4249_RS07010 overlap by 4 nucleotidesA4249_RS07010 and A4249_RS07015 are separated by 80 nucleotides A4249_RS06990: A4249_RS06990 - MT-A70 family methyltransferase, at 1,411,736 to 1,412,311 _RS06990 A4249_RS06995: A4249_RS06995 - DUF968 domain-containing protein, at 1,412,315 to 1,412,749 _RS06995 A4249_RS07000: A4249_RS07000 - hypothetical protein, at 1,412,749 to 1,413,261 _RS07000 A4249_RS07005: A4249_RS07005 - YqaJ viral recombinase family protein, at 1,413,258 to 1,413,893 _RS07005 A4249_RS07010: A4249_RS07010 - ERF family protein, at 1,413,890 to 1,414,609 _RS07010 A4249_RS07015: A4249_RS07015 - hypothetical protein, at 1,414,690 to 1,414,935 _RS07015 Position (kb) 1413 1414Strain fitness (log2 ratio) -2 -1 0 1at 1412.317 kb on - strandat 1412.317 kb on - strandat 1412.317 kb on - strandat 1412.317 kb on - strandat 1412.317 kb on - strandat 1412.352 kb on + strandat 1412.353 kb on - strandat 1412.353 kb on - strandat 1412.353 kb on - strandat 1412.353 kb on - strandat 1412.353 kb on - strandat 1412.361 kb on + strand, within A4249_RS06995at 1412.530 kb on + strand, within A4249_RS06995at 1412.530 kb on + strand, within A4249_RS06995at 1412.531 kb on - strand, within A4249_RS06995at 1412.607 kb on + strand, within A4249_RS06995at 1412.607 kb on + strand, within A4249_RS06995at 1412.607 kb on + strand, within A4249_RS06995at 1412.607 kb on + strand, within A4249_RS06995at 1412.608 kb on - strand, within A4249_RS06995at 1412.608 kb on - strand, within A4249_RS06995at 1412.925 kb on - strand, within A4249_RS07000at 1412.925 kb on - strand, within A4249_RS07000at 1412.925 kb on - strand, within A4249_RS07000at 1412.990 kb on + strand, within A4249_RS07000at 1412.990 kb on + strand, within A4249_RS07000at 1412.990 kb on + strand, within A4249_RS07000at 1412.991 kb on - strand, within A4249_RS07000at 1412.991 kb on - strand, within A4249_RS07000at 1412.991 kb on - strand, within A4249_RS07000at 1412.991 kb on - strand, within A4249_RS07000at 1412.991 kb on - strand, within A4249_RS07000at 1412.991 kb on - strand, within A4249_RS07000at 1412.991 kb on - strand, within A4249_RS07000at 1413.287 kb on - strandat 1413.490 kb on + strand, within A4249_RS07005at 1413.490 kb on + strand, within A4249_RS07005at 1413.490 kb on + strand, within A4249_RS07005at 1413.491 kb on - strand, within A4249_RS07005at 1413.491 kb on - strand, within A4249_RS07005at 1413.491 kb on - strand, within A4249_RS07005at 1413.491 kb on - strand, within A4249_RS07005at 1413.667 kb on + strand, within A4249_RS07005at 1413.668 kb on - strand, within A4249_RS07005at 1413.775 kb on + strand, within A4249_RS07005at 1413.775 kb on + strand, within A4249_RS07005at 1413.775 kb on + strand, within A4249_RS07005at 1413.776 kb on - strand, within A4249_RS07005at 1413.776 kb on - strand, within A4249_RS07005at 1413.776 kb on - strand, within A4249_RS07005at 1413.927 kb on + strandat 1413.927 kb on + strandat 1413.927 kb on + strandat 1413.928 kb on - strandat 1414.040 kb on - strand, within A4249_RS07010at 1414.137 kb on + strand, within A4249_RS07010at 1414.138 kb on - strand, within A4249_RS07010at 1414.138 kb on - strand, within A4249_RS07010at 1414.149 kb on + strand, within A4249_RS07010at 1414.149 kb on + strand, within A4249_RS07010at 1414.150 kb on - strand, within A4249_RS07010at 1414.150 kb on - strand, within A4249_RS07010at 1414.150 kb on - strand, within A4249_RS07010at 1414.299 kb on + strand, within A4249_RS07010at 1414.299 kb on + strand, within A4249_RS07010at 1414.345 kb on - strand, within A4249_RS07010at 1414.362 kb on + strand, within A4249_RS07010at 1414.362 kb on + strand, within A4249_RS07010at 1414.363 kb on - strand, within A4249_RS07010at 1414.363 kb on - strand, within A4249_RS07010at 1414.860 kb on + strand, within A4249_RS07015at 1414.860 kb on + strand, within A4249_RS07015at 1414.860 kb on + strand, within A4249_RS07015at 1414.861 kb on - strand, within A4249_RS07015at 1414.861 kb on - strand, within A4249_RS07015

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,412,317 - +1.5
1,412,317 - +0.3
1,412,317 - -1.2
1,412,317 - -0.4
1,412,317 - -0.5
1,412,352 + -0.8
1,412,353 - -0.2
1,412,353 - -0.4
1,412,353 - -0.8
1,412,353 - -0.4
1,412,353 - -0.3
1,412,361 + A4249_RS06995 0.11 -0.7
1,412,530 + A4249_RS06995 0.49 +0.1
1,412,530 + A4249_RS06995 0.49 -0.0
1,412,531 - A4249_RS06995 0.50 -1.6
1,412,607 + A4249_RS06995 0.67 -0.1
1,412,607 + A4249_RS06995 0.67 +0.1
1,412,607 + A4249_RS06995 0.67 -1.4
1,412,607 + A4249_RS06995 0.67 +0.1
1,412,608 - A4249_RS06995 0.67 -0.6
1,412,608 - A4249_RS06995 0.67 +0.1
1,412,925 - A4249_RS07000 0.34 +0.4
1,412,925 - A4249_RS07000 0.34 -0.4
1,412,925 - A4249_RS07000 0.34 +0.1
1,412,990 + A4249_RS07000 0.47 -1.0
1,412,990 + A4249_RS07000 0.47 -0.4
1,412,990 + A4249_RS07000 0.47 -0.6
1,412,991 - A4249_RS07000 0.47 -1.4
1,412,991 - A4249_RS07000 0.47 +1.1
1,412,991 - A4249_RS07000 0.47 +0.1
1,412,991 - A4249_RS07000 0.47 +0.2
1,412,991 - A4249_RS07000 0.47 -0.0
1,412,991 - A4249_RS07000 0.47 +0.8
1,412,991 - A4249_RS07000 0.47 +0.3
1,413,287 - -1.2
1,413,490 + A4249_RS07005 0.36 -1.5
1,413,490 + A4249_RS07005 0.36 -0.2
1,413,490 + A4249_RS07005 0.36 -0.8
1,413,491 - A4249_RS07005 0.37 -0.4
1,413,491 - A4249_RS07005 0.37 -0.6
1,413,491 - A4249_RS07005 0.37 -1.4
1,413,491 - A4249_RS07005 0.37 -0.2
1,413,667 + A4249_RS07005 0.64 +0.1
1,413,668 - A4249_RS07005 0.64 -0.3
1,413,775 + A4249_RS07005 0.81 +0.7
1,413,775 + A4249_RS07005 0.81 -1.0
1,413,775 + A4249_RS07005 0.81 +0.4
1,413,776 - A4249_RS07005 0.81 -0.2
1,413,776 - A4249_RS07005 0.81 +0.8
1,413,776 - A4249_RS07005 0.81 -1.4
1,413,927 + +0.2
1,413,927 + -0.2
1,413,927 + +0.6
1,413,928 - -2.1
1,414,040 - A4249_RS07010 0.21 -0.5
1,414,137 + A4249_RS07010 0.34 +0.1
1,414,138 - A4249_RS07010 0.34 -0.7
1,414,138 - A4249_RS07010 0.34 +1.6
1,414,149 + A4249_RS07010 0.36 +0.1
1,414,149 + A4249_RS07010 0.36 -1.3
1,414,150 - A4249_RS07010 0.36 +0.9
1,414,150 - A4249_RS07010 0.36 -0.1
1,414,150 - A4249_RS07010 0.36 +0.7
1,414,299 + A4249_RS07010 0.57 +0.2
1,414,299 + A4249_RS07010 0.57 -0.6
1,414,345 - A4249_RS07010 0.63 -0.0
1,414,362 + A4249_RS07010 0.66 +0.3
1,414,362 + A4249_RS07010 0.66 -0.1
1,414,363 - A4249_RS07010 0.66 -0.1
1,414,363 - A4249_RS07010 0.66 -1.1
1,414,860 + A4249_RS07015 0.69 -1.3
1,414,860 + A4249_RS07015 0.69 +0.7
1,414,860 + A4249_RS07015 0.69 +0.0
1,414,861 - A4249_RS07015 0.70 -0.1
1,414,861 - A4249_RS07015 0.70 -0.2

Or see this region's nucleotide sequence