Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05100

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05085 and A4249_RS05090 are separated by 201 nucleotidesA4249_RS05090 and A4249_RS05095 are separated by 122 nucleotidesA4249_RS05095 and A4249_RS05100 are separated by 68 nucleotidesA4249_RS05100 and A4249_RS05105 are separated by 94 nucleotides A4249_RS05085: A4249_RS05085 - tRNA-Pro, at 1,049,122 to 1,049,198 _RS05085 A4249_RS05090: A4249_RS05090 - tRNA-Gln, at 1,049,400 to 1,049,473 _RS05090 A4249_RS05095: A4249_RS05095 - DNA starvation/stationary phase protection protein, at 1,049,596 to 1,050,114 _RS05095 A4249_RS05100: A4249_RS05100 - hypothetical protein, at 1,050,183 to 1,050,545 _RS05100 A4249_RS05105: A4249_RS05105 - tyrosine-type recombinase/integrase, at 1,050,640 to 1,051,734 _RS05105 Position (kb) 1050 1051Strain fitness (log2 ratio) -2 -1 0 1 2at 1049.310 kb on + strandat 1049.311 kb on - strandat 1049.508 kb on + strandat 1049.509 kb on - strandat 1049.509 kb on - strandat 1049.522 kb on + strandat 1049.522 kb on + strandat 1049.522 kb on + strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.719 kb on + strand, within A4249_RS05095at 1049.719 kb on + strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.773 kb on + strand, within A4249_RS05095at 1049.773 kb on + strand, within A4249_RS05095at 1049.773 kb on + strand, within A4249_RS05095at 1049.774 kb on - strand, within A4249_RS05095at 1049.872 kb on - strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.921 kb on - strand, within A4249_RS05095at 1049.921 kb on - strand, within A4249_RS05095at 1049.937 kb on + strand, within A4249_RS05095at 1049.937 kb on + strand, within A4249_RS05095at 1049.937 kb on + strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.144 kb on - strandat 1050.144 kb on - strandat 1050.144 kb on - strandat 1050.216 kb on - strandat 1050.216 kb on - strandat 1050.216 kb on - strandat 1050.254 kb on + strand, within A4249_RS05100at 1050.254 kb on + strand, within A4249_RS05100at 1050.254 kb on + strand, within A4249_RS05100at 1050.255 kb on - strand, within A4249_RS05100at 1050.255 kb on - strand, within A4249_RS05100at 1050.275 kb on + strand, within A4249_RS05100at 1050.275 kb on + strand, within A4249_RS05100at 1050.275 kb on + strand, within A4249_RS05100at 1050.276 kb on - strand, within A4249_RS05100at 1050.276 kb on - strand, within A4249_RS05100at 1050.276 kb on - strand, within A4249_RS05100at 1050.318 kb on + strand, within A4249_RS05100at 1050.339 kb on + strand, within A4249_RS05100at 1050.339 kb on + strand, within A4249_RS05100at 1050.339 kb on + strand, within A4249_RS05100at 1050.339 kb on + strand, within A4249_RS05100at 1050.339 kb on + strand, within A4249_RS05100at 1050.339 kb on + strand, within A4249_RS05100at 1050.573 kb on + strandat 1050.574 kb on - strandat 1050.823 kb on + strand, within A4249_RS05105at 1050.823 kb on + strand, within A4249_RS05105at 1050.824 kb on - strand, within A4249_RS05105at 1050.946 kb on - strand, within A4249_RS05105at 1050.946 kb on - strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.049 kb on + strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.050 kb on - strand, within A4249_RS05105at 1051.114 kb on + strand, within A4249_RS05105at 1051.148 kb on + strand, within A4249_RS05105at 1051.149 kb on - strand, within A4249_RS05105at 1051.158 kb on + strand, within A4249_RS05105at 1051.158 kb on + strand, within A4249_RS05105at 1051.158 kb on + strand, within A4249_RS05105at 1051.158 kb on + strand, within A4249_RS05105at 1051.158 kb on + strand, within A4249_RS05105at 1051.159 kb on - strand, within A4249_RS05105at 1051.159 kb on - strand, within A4249_RS05105at 1051.168 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.380 kb on + strand, within A4249_RS05105at 1051.381 kb on - strand, within A4249_RS05105at 1051.381 kb on - strand, within A4249_RS05105at 1051.381 kb on - strand, within A4249_RS05105at 1051.381 kb on - strand, within A4249_RS05105at 1051.381 kb on - strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.483 kb on + strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105at 1051.484 kb on - strand, within A4249_RS05105

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,049,310 + +1.4
1,049,311 - -0.6
1,049,508 + -0.5
1,049,509 - -0.5
1,049,509 - +0.0
1,049,522 + -0.9
1,049,522 + +0.1
1,049,522 + -0.2
1,049,523 - -0.3
1,049,523 - -1.8
1,049,523 - +0.1
1,049,523 - -0.6
1,049,523 - -0.6
1,049,523 - +0.9
1,049,563 + -0.3
1,049,563 + +0.3
1,049,563 + -0.2
1,049,563 + +0.5
1,049,563 + -0.0
1,049,563 + -0.4
1,049,564 - +1.0
1,049,564 - -1.0
1,049,564 - -0.1
1,049,564 - +1.8
1,049,564 - +0.7
1,049,564 - -0.6
1,049,564 - -1.1
1,049,564 - -1.2
1,049,564 - +0.3
1,049,564 - +0.5
1,049,579 + +0.2
1,049,579 + -0.2
1,049,579 + +0.5
1,049,579 + -0.4
1,049,579 + +1.2
1,049,579 + -0.7
1,049,579 + +1.2
1,049,579 + -0.2
1,049,579 + -0.1
1,049,580 - +0.1
1,049,580 - +0.0
1,049,580 - -0.2
1,049,580 - +0.4
1,049,580 - -0.8
1,049,580 - -0.8
1,049,580 - -0.2
1,049,580 - -1.6
1,049,719 + A4249_RS05095 0.24 +1.2
1,049,719 + A4249_RS05095 0.24 +0.8
1,049,720 - A4249_RS05095 0.24 -0.6
1,049,720 - A4249_RS05095 0.24 +0.3
1,049,720 - A4249_RS05095 0.24 -0.5
1,049,720 - A4249_RS05095 0.24 -0.7
1,049,720 - A4249_RS05095 0.24 -0.1
1,049,720 - A4249_RS05095 0.24 +1.7
1,049,773 + A4249_RS05095 0.34 -0.3
1,049,773 + A4249_RS05095 0.34 -1.4
1,049,773 + A4249_RS05095 0.34 -0.1
1,049,774 - A4249_RS05095 0.34 -0.3
1,049,872 - A4249_RS05095 0.53 +0.7
1,049,920 + A4249_RS05095 0.62 -0.2
1,049,920 + A4249_RS05095 0.62 +2.4
1,049,920 + A4249_RS05095 0.62 -0.5
1,049,920 + A4249_RS05095 0.62 +0.8
1,049,920 + A4249_RS05095 0.62 -0.0
1,049,921 - A4249_RS05095 0.63 -1.4
1,049,921 - A4249_RS05095 0.63 -1.1
1,049,937 + A4249_RS05095 0.66 +0.1
1,049,937 + A4249_RS05095 0.66 -0.3
1,049,937 + A4249_RS05095 0.66 +0.4
1,050,016 - A4249_RS05095 0.81 -0.1
1,050,016 - A4249_RS05095 0.81 +0.5
1,050,016 - A4249_RS05095 0.81 -0.3
1,050,016 - A4249_RS05095 0.81 +0.3
1,050,139 + -0.1
1,050,139 + +0.4
1,050,139 + -1.3
1,050,139 + -0.6
1,050,139 + -0.0
1,050,139 + -0.1
1,050,139 + -0.3
1,050,139 + +0.8
1,050,139 + +0.2
1,050,139 + -0.2
1,050,139 + +0.7
1,050,139 + -2.3
1,050,139 + -0.9
1,050,139 + +0.4
1,050,140 - -0.1
1,050,140 - +1.6
1,050,140 - -0.9
1,050,140 - -0.2
1,050,140 - -1.0
1,050,140 - -1.4
1,050,140 - +0.4
1,050,140 - -0.7
1,050,140 - +0.1
1,050,140 - +0.3
1,050,140 - +0.0
1,050,140 - +0.1
1,050,140 - -0.7
1,050,140 - -2.1
1,050,140 - -0.7
1,050,143 + +0.4
1,050,143 + +0.6
1,050,143 + -0.5
1,050,143 + -1.2
1,050,143 + +0.1
1,050,144 - -1.2
1,050,144 - -0.1
1,050,144 - +0.5
1,050,216 - +0.3
1,050,216 - -1.1
1,050,216 - +0.3
1,050,254 + A4249_RS05100 0.20 +0.3
1,050,254 + A4249_RS05100 0.20 +0.3
1,050,254 + A4249_RS05100 0.20 -1.1
1,050,255 - A4249_RS05100 0.20 -0.9
1,050,255 - A4249_RS05100 0.20 +0.3
1,050,275 + A4249_RS05100 0.25 -0.0
1,050,275 + A4249_RS05100 0.25 -1.7
1,050,275 + A4249_RS05100 0.25 +0.7
1,050,276 - A4249_RS05100 0.26 +0.5
1,050,276 - A4249_RS05100 0.26 -2.1
1,050,276 - A4249_RS05100 0.26 -0.4
1,050,318 + A4249_RS05100 0.37 -0.2
1,050,339 + A4249_RS05100 0.43 -1.4
1,050,339 + A4249_RS05100 0.43 -0.3
1,050,339 + A4249_RS05100 0.43 +0.1
1,050,339 + A4249_RS05100 0.43 +0.2
1,050,339 + A4249_RS05100 0.43 -0.3
1,050,339 + A4249_RS05100 0.43 -0.9
1,050,573 + +0.8
1,050,574 - -0.8
1,050,823 + A4249_RS05105 0.17 +0.2
1,050,823 + A4249_RS05105 0.17 -1.1
1,050,824 - A4249_RS05105 0.17 +1.3
1,050,946 - A4249_RS05105 0.28 -1.0
1,050,946 - A4249_RS05105 0.28 -0.8
1,051,049 + A4249_RS05105 0.37 +1.4
1,051,049 + A4249_RS05105 0.37 -0.1
1,051,049 + A4249_RS05105 0.37 -0.4
1,051,049 + A4249_RS05105 0.37 -0.3
1,051,049 + A4249_RS05105 0.37 -0.7
1,051,049 + A4249_RS05105 0.37 +0.5
1,051,049 + A4249_RS05105 0.37 -0.5
1,051,049 + A4249_RS05105 0.37 -0.2
1,051,049 + A4249_RS05105 0.37 +0.1
1,051,049 + A4249_RS05105 0.37 -0.3
1,051,049 + A4249_RS05105 0.37 -0.6
1,051,049 + A4249_RS05105 0.37 -0.3
1,051,050 - A4249_RS05105 0.37 +0.4
1,051,050 - A4249_RS05105 0.37 +1.4
1,051,050 - A4249_RS05105 0.37 -0.4
1,051,050 - A4249_RS05105 0.37 +1.0
1,051,050 - A4249_RS05105 0.37 -1.0
1,051,050 - A4249_RS05105 0.37 -0.6
1,051,050 - A4249_RS05105 0.37 -0.8
1,051,050 - A4249_RS05105 0.37 +0.3
1,051,050 - A4249_RS05105 0.37 -0.1
1,051,114 + A4249_RS05105 0.43 -0.1
1,051,148 + A4249_RS05105 0.46 -0.2
1,051,149 - A4249_RS05105 0.46 +0.3
1,051,158 + A4249_RS05105 0.47 +0.7
1,051,158 + A4249_RS05105 0.47 -1.0
1,051,158 + A4249_RS05105 0.47 +0.2
1,051,158 + A4249_RS05105 0.47 -0.7
1,051,158 + A4249_RS05105 0.47 -0.5
1,051,159 - A4249_RS05105 0.47 +0.0
1,051,159 - A4249_RS05105 0.47 +1.0
1,051,168 + A4249_RS05105 0.48 -1.0
1,051,380 + A4249_RS05105 0.68 +0.5
1,051,380 + A4249_RS05105 0.68 -0.1
1,051,380 + A4249_RS05105 0.68 +0.9
1,051,380 + A4249_RS05105 0.68 +0.3
1,051,380 + A4249_RS05105 0.68 -0.4
1,051,380 + A4249_RS05105 0.68 -0.1
1,051,380 + A4249_RS05105 0.68 +0.0
1,051,380 + A4249_RS05105 0.68 -0.6
1,051,381 - A4249_RS05105 0.68 +0.7
1,051,381 - A4249_RS05105 0.68 -1.8
1,051,381 - A4249_RS05105 0.68 -0.6
1,051,381 - A4249_RS05105 0.68 -1.4
1,051,381 - A4249_RS05105 0.68 +0.2
1,051,483 + A4249_RS05105 0.77 -0.5
1,051,483 + A4249_RS05105 0.77 +0.1
1,051,483 + A4249_RS05105 0.77 -0.2
1,051,483 + A4249_RS05105 0.77 -0.4
1,051,483 + A4249_RS05105 0.77 +0.1
1,051,483 + A4249_RS05105 0.77 -0.5
1,051,483 + A4249_RS05105 0.77 +0.3
1,051,483 + A4249_RS05105 0.77 +0.5
1,051,483 + A4249_RS05105 0.77 -0.1
1,051,484 - A4249_RS05105 0.77 -0.3
1,051,484 - A4249_RS05105 0.77 -1.9
1,051,484 - A4249_RS05105 0.77 +0.2
1,051,484 - A4249_RS05105 0.77 -0.6
1,051,484 - A4249_RS05105 0.77 -0.7
1,051,484 - A4249_RS05105 0.77 -0.7
1,051,484 - A4249_RS05105 0.77 +0.7
1,051,484 - A4249_RS05105 0.77 +0.1
1,051,484 - A4249_RS05105 0.77 -0.1

Or see this region's nucleotide sequence