Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04970

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04960 and A4249_RS04970 are separated by 377 nucleotidesA4249_RS04970 and A4249_RS04975 overlap by 4 nucleotidesA4249_RS04975 and A4249_RS04980 are separated by 106 nucleotides A4249_RS04960: A4249_RS04960 - UvrD-helicase domain-containing protein, at 1,030,493 to 1,032,847 _RS04960 A4249_RS04970: A4249_RS04970 - ribbon-helix-helix domain-containing protein, at 1,033,225 to 1,033,449 _RS04970 A4249_RS04975: A4249_RS04975 - YbaY family lipoprotein, at 1,033,446 to 1,033,853 _RS04975 A4249_RS04980: A4249_RS04980 - EamA family transporter, at 1,033,960 to 1,034,844 _RS04980 Position (kb) 1033 1034Strain fitness (log2 ratio) -2 -1 0 1 2at 1032.602 kb on - strand, within A4249_RS04960at 1032.860 kb on - strandat 1032.889 kb on + strandat 1032.890 kb on - strandat 1032.890 kb on - strandat 1032.964 kb on + strandat 1032.964 kb on + strandat 1032.964 kb on + strandat 1032.965 kb on - strandat 1032.965 kb on - strandat 1033.046 kb on + strandat 1033.046 kb on + strandat 1033.046 kb on + strandat 1033.046 kb on + strandat 1033.046 kb on + strandat 1033.197 kb on + strandat 1033.197 kb on + strandat 1033.197 kb on + strandat 1033.198 kb on - strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.203 kb on + strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.204 kb on - strandat 1033.207 kb on + strandat 1033.208 kb on - strandat 1033.208 kb on - strandat 1033.390 kb on + strand, within A4249_RS04970at 1033.520 kb on + strand, within A4249_RS04975at 1033.570 kb on + strand, within A4249_RS04975at 1033.570 kb on + strand, within A4249_RS04975at 1033.570 kb on + strand, within A4249_RS04975at 1033.570 kb on + strand, within A4249_RS04975at 1033.570 kb on + strand, within A4249_RS04975at 1033.570 kb on + strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.571 kb on - strand, within A4249_RS04975at 1033.748 kb on - strand, within A4249_RS04975at 1033.748 kb on - strand, within A4249_RS04975at 1033.764 kb on + strand, within A4249_RS04975at 1033.765 kb on - strand, within A4249_RS04975at 1033.765 kb on - strand, within A4249_RS04975at 1033.919 kb on - strandat 1033.919 kb on - strandat 1033.928 kb on + strandat 1033.929 kb on - strandat 1034.200 kb on + strand, within A4249_RS04980at 1034.200 kb on + strand, within A4249_RS04980at 1034.200 kb on + strand, within A4249_RS04980at 1034.200 kb on + strand, within A4249_RS04980at 1034.200 kb on + strand, within A4249_RS04980at 1034.200 kb on + strand, within A4249_RS04980at 1034.200 kb on + strand, within A4249_RS04980at 1034.201 kb on - strand, within A4249_RS04980at 1034.201 kb on - strand, within A4249_RS04980at 1034.201 kb on - strand, within A4249_RS04980at 1034.201 kb on - strand, within A4249_RS04980at 1034.212 kb on + strand, within A4249_RS04980at 1034.342 kb on + strand, within A4249_RS04980at 1034.342 kb on + strand, within A4249_RS04980at 1034.342 kb on + strand, within A4249_RS04980at 1034.343 kb on - strand, within A4249_RS04980at 1034.343 kb on - strand, within A4249_RS04980at 1034.343 kb on - strand, within A4249_RS04980at 1034.374 kb on + strand, within A4249_RS04980at 1034.374 kb on + strand, within A4249_RS04980at 1034.374 kb on + strand, within A4249_RS04980at 1034.375 kb on - strand, within A4249_RS04980at 1034.445 kb on - strand, within A4249_RS04980

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,032,602 - A4249_RS04960 0.90 +1.1
1,032,860 - -0.2
1,032,889 + -0.6
1,032,890 - +1.0
1,032,890 - -1.0
1,032,964 + -0.5
1,032,964 + -0.4
1,032,964 + -0.0
1,032,965 - +1.0
1,032,965 - -1.1
1,033,046 + -0.8
1,033,046 + +1.2
1,033,046 + +0.4
1,033,046 + -0.6
1,033,046 + -0.3
1,033,197 + -1.7
1,033,197 + -0.6
1,033,197 + -1.3
1,033,198 - +1.6
1,033,203 + +0.3
1,033,203 + +0.7
1,033,203 + -0.8
1,033,203 + +0.2
1,033,203 + +0.3
1,033,203 + +0.9
1,033,203 + +0.1
1,033,203 + -1.2
1,033,203 + +0.1
1,033,204 - -0.1
1,033,204 - -0.1
1,033,204 - -0.9
1,033,204 - +0.3
1,033,204 - -1.0
1,033,204 - +0.2
1,033,204 - -0.4
1,033,204 - -2.0
1,033,204 - +1.0
1,033,204 - -0.7
1,033,204 - -1.0
1,033,204 - -0.1
1,033,207 + -0.5
1,033,208 - -1.0
1,033,208 - +1.0
1,033,390 + A4249_RS04970 0.73 -1.0
1,033,520 + A4249_RS04975 0.18 +0.8
1,033,570 + A4249_RS04975 0.30 -0.4
1,033,570 + A4249_RS04975 0.30 +1.2
1,033,570 + A4249_RS04975 0.30 -0.1
1,033,570 + A4249_RS04975 0.30 +1.5
1,033,570 + A4249_RS04975 0.30 +1.3
1,033,570 + A4249_RS04975 0.30 +0.8
1,033,571 - A4249_RS04975 0.31 +0.2
1,033,571 - A4249_RS04975 0.31 -0.8
1,033,571 - A4249_RS04975 0.31 -1.6
1,033,571 - A4249_RS04975 0.31 -0.6
1,033,571 - A4249_RS04975 0.31 -0.4
1,033,571 - A4249_RS04975 0.31 -0.9
1,033,571 - A4249_RS04975 0.31 -0.3
1,033,571 - A4249_RS04975 0.31 -0.1
1,033,571 - A4249_RS04975 0.31 +0.2
1,033,571 - A4249_RS04975 0.31 -0.9
1,033,571 - A4249_RS04975 0.31 -0.7
1,033,571 - A4249_RS04975 0.31 +1.1
1,033,748 - A4249_RS04975 0.74 -0.5
1,033,748 - A4249_RS04975 0.74 +0.0
1,033,764 + A4249_RS04975 0.78 -1.1
1,033,765 - A4249_RS04975 0.78 -0.1
1,033,765 - A4249_RS04975 0.78 +1.2
1,033,919 - -0.3
1,033,919 - +0.2
1,033,928 + +0.6
1,033,929 - +0.4
1,034,200 + A4249_RS04980 0.27 -0.6
1,034,200 + A4249_RS04980 0.27 -0.0
1,034,200 + A4249_RS04980 0.27 +0.2
1,034,200 + A4249_RS04980 0.27 +0.3
1,034,200 + A4249_RS04980 0.27 -0.5
1,034,200 + A4249_RS04980 0.27 +0.9
1,034,200 + A4249_RS04980 0.27 -0.8
1,034,201 - A4249_RS04980 0.27 -2.7
1,034,201 - A4249_RS04980 0.27 +0.3
1,034,201 - A4249_RS04980 0.27 -1.6
1,034,201 - A4249_RS04980 0.27 +1.7
1,034,212 + A4249_RS04980 0.28 -0.7
1,034,342 + A4249_RS04980 0.43 +2.4
1,034,342 + A4249_RS04980 0.43 -0.6
1,034,342 + A4249_RS04980 0.43 -1.1
1,034,343 - A4249_RS04980 0.43 +0.1
1,034,343 - A4249_RS04980 0.43 -0.1
1,034,343 - A4249_RS04980 0.43 -0.2
1,034,374 + A4249_RS04980 0.47 -0.1
1,034,374 + A4249_RS04980 0.47 -1.1
1,034,374 + A4249_RS04980 0.47 -0.6
1,034,375 - A4249_RS04980 0.47 +0.6
1,034,445 - A4249_RS04980 0.55 -0.7

Or see this region's nucleotide sequence