Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04785

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04780 and A4249_RS04785 are separated by 201 nucleotidesA4249_RS04785 and A4249_RS04790 overlap by 44 nucleotidesA4249_RS04790 and A4249_RS04795 overlap by 4 nucleotidesA4249_RS04795 and A4249_RS04800 are separated by 40 nucleotides A4249_RS04780: A4249_RS04780 - diguanylate cyclase, at 995,188 to 996,495 _RS04780 A4249_RS04785: A4249_RS04785 - YihY/virulence factor BrkB family protein, at 996,697 to 997,641 _RS04785 A4249_RS04790: A4249_RS04790 - sulfurtransferase TusA family protein, at 997,598 to 997,849 _RS04790 A4249_RS04795: A4249_RS04795 - CinA family protein, at 997,846 to 998,334 _RS04795 A4249_RS04800: A4249_RS04800 - fused MFS/spermidine synthase, at 998,375 to 1,000,663 _RS04800 Position (kb) 996 997 998Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.826 kb on - strand, within A4249_RS04780at 995.826 kb on - strand, within A4249_RS04780at 995.842 kb on - strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.949 kb on - strand, within A4249_RS04780at 995.949 kb on - strand, within A4249_RS04780at 995.963 kb on + strand, within A4249_RS04780at 995.964 kb on - strand, within A4249_RS04780at 996.134 kb on + strand, within A4249_RS04780at 996.135 kb on - strand, within A4249_RS04780at 996.475 kb on + strandat 996.475 kb on + strandat 996.475 kb on + strandat 996.552 kb on - strandat 996.552 kb on - strandat 996.563 kb on + strandat 996.563 kb on + strandat 996.563 kb on + strandat 996.564 kb on - strandat 996.564 kb on - strandat 996.564 kb on - strandat 996.566 kb on + strandat 996.566 kb on + strandat 996.566 kb on + strandat 996.566 kb on + strandat 996.566 kb on + strandat 996.566 kb on + strandat 996.566 kb on + strandat 996.567 kb on - strandat 996.799 kb on + strand, within A4249_RS04785at 996.799 kb on + strand, within A4249_RS04785at 996.799 kb on + strand, within A4249_RS04785at 996.800 kb on - strand, within A4249_RS04785at 996.800 kb on - strand, within A4249_RS04785at 996.800 kb on - strand, within A4249_RS04785at 996.800 kb on - strand, within A4249_RS04785at 996.800 kb on - strand, within A4249_RS04785at 996.801 kb on + strand, within A4249_RS04785at 996.802 kb on - strand, within A4249_RS04785at 996.868 kb on + strand, within A4249_RS04785at 996.868 kb on + strand, within A4249_RS04785at 996.868 kb on + strand, within A4249_RS04785at 996.868 kb on + strand, within A4249_RS04785at 996.869 kb on - strand, within A4249_RS04785at 996.869 kb on - strand, within A4249_RS04785at 997.167 kb on + strand, within A4249_RS04785at 997.167 kb on + strand, within A4249_RS04785at 997.168 kb on - strand, within A4249_RS04785at 997.168 kb on - strand, within A4249_RS04785at 997.312 kb on + strand, within A4249_RS04785at 997.319 kb on - strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.420 kb on + strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.421 kb on - strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.453 kb on + strand, within A4249_RS04785at 997.454 kb on - strand, within A4249_RS04785at 997.454 kb on - strand, within A4249_RS04785at 997.454 kb on - strand, within A4249_RS04785at 997.454 kb on - strand, within A4249_RS04785at 997.454 kb on - strand, within A4249_RS04785at 997.454 kb on - strand, within A4249_RS04785at 997.519 kb on + strand, within A4249_RS04785at 997.520 kb on - strand, within A4249_RS04785at 997.520 kb on - strand, within A4249_RS04785at 997.639 kb on + strandat 997.639 kb on + strandat 997.640 kb on - strandat 997.640 kb on - strandat 997.640 kb on - strandat 997.640 kb on - strandat 997.640 kb on - strandat 997.700 kb on + strand, within A4249_RS04790at 997.700 kb on + strand, within A4249_RS04790at 997.700 kb on + strand, within A4249_RS04790at 997.701 kb on - strand, within A4249_RS04790at 997.701 kb on - strand, within A4249_RS04790at 997.829 kb on + strandat 997.830 kb on - strandat 997.830 kb on - strandat 997.830 kb on - strandat 997.830 kb on - strandat 997.830 kb on - strandat 997.830 kb on - strandat 997.830 kb on - strandat 998.029 kb on + strand, within A4249_RS04795at 998.030 kb on - strand, within A4249_RS04795at 998.168 kb on + strand, within A4249_RS04795at 998.168 kb on + strand, within A4249_RS04795at 998.168 kb on + strand, within A4249_RS04795at 998.168 kb on + strand, within A4249_RS04795at 998.168 kb on + strand, within A4249_RS04795at 998.169 kb on - strand, within A4249_RS04795at 998.169 kb on - strand, within A4249_RS04795at 998.169 kb on - strand, within A4249_RS04795at 998.169 kb on - strand, within A4249_RS04795at 998.319 kb on + strandat 998.319 kb on + strandat 998.319 kb on + strandat 998.320 kb on - strandat 998.320 kb on - strandat 998.320 kb on - strandat 998.320 kb on - strandat 998.320 kb on - strandat 998.345 kb on + strandat 998.387 kb on - strandat 998.397 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.458 kb on + strandat 998.459 kb on - strandat 998.459 kb on - strandat 998.459 kb on - strandat 998.591 kb on + strandat 998.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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995,825 + A4249_RS04780 0.49 -2.2
995,825 + A4249_RS04780 0.49 -0.4
995,825 + A4249_RS04780 0.49 +0.4
995,825 + A4249_RS04780 0.49 -0.9
995,825 + A4249_RS04780 0.49 +0.1
995,825 + A4249_RS04780 0.49 +0.9
995,826 - A4249_RS04780 0.49 -0.4
995,826 - A4249_RS04780 0.49 +1.0
995,842 - A4249_RS04780 0.50 -0.1
995,846 + A4249_RS04780 0.50 -3.0
995,846 + A4249_RS04780 0.50 -0.7
995,846 + A4249_RS04780 0.50 -0.1
995,846 + A4249_RS04780 0.50 -1.0
995,846 + A4249_RS04780 0.50 +0.4
995,846 + A4249_RS04780 0.50 -0.2
995,847 - A4249_RS04780 0.50 +0.3
995,847 - A4249_RS04780 0.50 +1.4
995,847 - A4249_RS04780 0.50 +1.3
995,847 - A4249_RS04780 0.50 +0.8
995,847 - A4249_RS04780 0.50 -0.0
995,847 - A4249_RS04780 0.50 -0.2
995,847 - A4249_RS04780 0.50 +1.2
995,847 - A4249_RS04780 0.50 -2.2
995,847 - A4249_RS04780 0.50 -0.2
995,948 + A4249_RS04780 0.58 +0.3
995,948 + A4249_RS04780 0.58 -0.2
995,948 + A4249_RS04780 0.58 -1.4
995,948 + A4249_RS04780 0.58 +0.0
995,948 + A4249_RS04780 0.58 +0.3
995,949 - A4249_RS04780 0.58 +0.1
995,949 - A4249_RS04780 0.58 -0.6
995,963 + A4249_RS04780 0.59 +1.2
995,964 - A4249_RS04780 0.59 -0.6
996,134 + A4249_RS04780 0.72 +0.7
996,135 - A4249_RS04780 0.72 +0.4
996,475 + +0.6
996,475 + -0.1
996,475 + -1.2
996,552 - +0.1
996,552 - -0.1
996,563 + +0.4
996,563 + +0.4
996,563 + -0.2
996,564 - +0.5
996,564 - -0.1
996,564 - +1.2
996,566 + -0.3
996,566 + +0.2
996,566 + +0.2
996,566 + -0.7
996,566 + -1.3
996,566 + +0.8
996,566 + -0.3
996,567 - -0.0
996,799 + A4249_RS04785 0.11 -0.5
996,799 + A4249_RS04785 0.11 +0.4
996,799 + A4249_RS04785 0.11 +0.6
996,800 - A4249_RS04785 0.11 -0.6
996,800 - A4249_RS04785 0.11 +0.2
996,800 - A4249_RS04785 0.11 +1.7
996,800 - A4249_RS04785 0.11 +1.4
996,800 - A4249_RS04785 0.11 -0.1
996,801 + A4249_RS04785 0.11 +0.3
996,802 - A4249_RS04785 0.11 +1.5
996,868 + A4249_RS04785 0.18 -0.8
996,868 + A4249_RS04785 0.18 -0.3
996,868 + A4249_RS04785 0.18 +1.0
996,868 + A4249_RS04785 0.18 -0.4
996,869 - A4249_RS04785 0.18 +1.4
996,869 - A4249_RS04785 0.18 +0.7
997,167 + A4249_RS04785 0.50 -0.6
997,167 + A4249_RS04785 0.50 +0.9
997,168 - A4249_RS04785 0.50 -1.4
997,168 - A4249_RS04785 0.50 -1.1
997,312 + A4249_RS04785 0.65 +0.7
997,319 - A4249_RS04785 0.66 +0.4
997,420 + A4249_RS04785 0.77 -0.7
997,420 + A4249_RS04785 0.77 -0.0
997,420 + A4249_RS04785 0.77 +1.0
997,420 + A4249_RS04785 0.77 -0.0
997,420 + A4249_RS04785 0.77 +0.1
997,420 + A4249_RS04785 0.77 +0.1
997,420 + A4249_RS04785 0.77 -0.0
997,420 + A4249_RS04785 0.77 -0.3
997,420 + A4249_RS04785 0.77 -1.6
997,420 + A4249_RS04785 0.77 +0.3
997,420 + A4249_RS04785 0.77 +0.7
997,420 + A4249_RS04785 0.77 +1.3
997,420 + A4249_RS04785 0.77 -1.6
997,420 + A4249_RS04785 0.77 +1.2
997,421 - A4249_RS04785 0.77 +0.2
997,421 - A4249_RS04785 0.77 +0.3
997,421 - A4249_RS04785 0.77 +0.1
997,421 - A4249_RS04785 0.77 +0.6
997,421 - A4249_RS04785 0.77 -0.7
997,421 - A4249_RS04785 0.77 -0.1
997,421 - A4249_RS04785 0.77 -0.8
997,421 - A4249_RS04785 0.77 +0.0
997,421 - A4249_RS04785 0.77 +2.5
997,421 - A4249_RS04785 0.77 -1.6
997,421 - A4249_RS04785 0.77 -0.9
997,453 + A4249_RS04785 0.80 +0.3
997,453 + A4249_RS04785 0.80 -1.7
997,453 + A4249_RS04785 0.80 +0.4
997,453 + A4249_RS04785 0.80 +0.4
997,453 + A4249_RS04785 0.80 +0.4
997,453 + A4249_RS04785 0.80 +0.4
997,453 + A4249_RS04785 0.80 +1.2
997,453 + A4249_RS04785 0.80 -0.4
997,453 + A4249_RS04785 0.80 +0.8
997,454 - A4249_RS04785 0.80 +0.0
997,454 - A4249_RS04785 0.80 +1.3
997,454 - A4249_RS04785 0.80 +1.1
997,454 - A4249_RS04785 0.80 +0.0
997,454 - A4249_RS04785 0.80 -0.4
997,454 - A4249_RS04785 0.80 +0.6
997,519 + A4249_RS04785 0.87 +0.4
997,520 - A4249_RS04785 0.87 +1.0
997,520 - A4249_RS04785 0.87 -0.5
997,639 + -0.0
997,639 + +0.3
997,640 - -2.1
997,640 - -0.5
997,640 - +0.6
997,640 - +0.7
997,640 - +0.7
997,700 + A4249_RS04790 0.40 +0.3
997,700 + A4249_RS04790 0.40 +0.6
997,700 + A4249_RS04790 0.40 -1.0
997,701 - A4249_RS04790 0.41 -1.0
997,701 - A4249_RS04790 0.41 +0.7
997,829 + -0.1
997,830 - +0.4
997,830 - +0.0
997,830 - +1.3
997,830 - -1.1
997,830 - +1.5
997,830 - -0.5
997,830 - -1.0
998,029 + A4249_RS04795 0.37 +1.4
998,030 - A4249_RS04795 0.38 -0.2
998,168 + A4249_RS04795 0.66 -0.2
998,168 + A4249_RS04795 0.66 -0.4
998,168 + A4249_RS04795 0.66 +0.0
998,168 + A4249_RS04795 0.66 +0.1
998,168 + A4249_RS04795 0.66 -1.4
998,169 - A4249_RS04795 0.66 +0.3
998,169 - A4249_RS04795 0.66 -0.2
998,169 - A4249_RS04795 0.66 -0.3
998,169 - A4249_RS04795 0.66 -1.0
998,319 + -0.3
998,319 + +0.6
998,319 + +0.3
998,320 - -0.0
998,320 - -0.9
998,320 - -0.4
998,320 - +0.1
998,320 - +1.0
998,345 + +0.4
998,387 - +0.4
998,397 + +1.3
998,458 + +0.1
998,458 + -0.5
998,458 + -1.0
998,458 + -1.3
998,458 + +1.0
998,458 + -2.1
998,458 + +0.2
998,458 + +1.0
998,458 + +1.0
998,459 - -0.4
998,459 - +1.4
998,459 - -0.1
998,591 + -0.2
998,592 - +0.1

Or see this region's nucleotide sequence