Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04130

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04125 and A4249_RS04130 overlap by 1 nucleotidesA4249_RS04130 and A4249_RS04135 are separated by 110 nucleotides A4249_RS04125: A4249_RS04125 - mechanosensitive ion channel family protein, at 857,844 to 858,797 _RS04125 A4249_RS04130: A4249_RS04130 - beta-eliminating lyase-related protein, at 858,797 to 859,813 _RS04130 A4249_RS04135: A4249_RS04135 - ABC transporter ATP-binding protein/permease, at 859,924 to 861,774 _RS04135 Position (kb) 858 859 860Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 858.035 kb on + strand, within A4249_RS04125at 858.035 kb on + strand, within A4249_RS04125at 858.035 kb on + strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.245 kb on + strand, within A4249_RS04125at 859.022 kb on + strand, within A4249_RS04130at 859.022 kb on + strand, within A4249_RS04130at 859.022 kb on + strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.242 kb on - strand, within A4249_RS04130at 859.292 kb on + strand, within A4249_RS04130at 859.293 kb on - strand, within A4249_RS04130at 859.578 kb on + strand, within A4249_RS04130at 859.578 kb on + strand, within A4249_RS04130at 859.715 kb on + strandat 859.715 kb on + strandat 859.715 kb on + strandat 859.716 kb on - strandat 859.819 kb on + strandat 859.820 kb on - strandat 859.820 kb on - strandat 859.872 kb on + strandat 859.890 kb on - strandat 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.246 kb on + strand, within A4249_RS04135at 860.246 kb on + strand, within A4249_RS04135at 860.246 kb on + strand, within A4249_RS04135at 860.247 kb on - strand, within A4249_RS04135at 860.247 kb on - strand, within A4249_RS04135at 860.473 kb on + strand, within A4249_RS04135at 860.473 kb on + strand, within A4249_RS04135at 860.473 kb on + strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.627 kb on - strand, within A4249_RS04135at 860.627 kb on - strand, within A4249_RS04135at 860.627 kb on - strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.675 kb on - strand, within A4249_RS04135at 860.675 kb on - strand, within A4249_RS04135at 860.695 kb on + strand, within A4249_RS04135at 860.696 kb on - strand, within A4249_RS04135

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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858,035 + A4249_RS04125 0.20 +0.5
858,035 + A4249_RS04125 0.20 +0.1
858,035 + A4249_RS04125 0.20 -2.6
858,036 - A4249_RS04125 0.20 -1.3
858,036 - A4249_RS04125 0.20 -1.3
858,036 - A4249_RS04125 0.20 -0.3
858,036 - A4249_RS04125 0.20 -2.3
858,036 - A4249_RS04125 0.20 +1.7
858,245 + A4249_RS04125 0.42 -0.8
859,022 + A4249_RS04130 0.22 +0.2
859,022 + A4249_RS04130 0.22 -0.1
859,022 + A4249_RS04130 0.22 +0.5
859,023 - A4249_RS04130 0.22 -0.2
859,023 - A4249_RS04130 0.22 -0.4
859,023 - A4249_RS04130 0.22 +0.5
859,023 - A4249_RS04130 0.22 +0.1
859,023 - A4249_RS04130 0.22 -0.0
859,023 - A4249_RS04130 0.22 +0.6
859,023 - A4249_RS04130 0.22 +0.3
859,023 - A4249_RS04130 0.22 +0.8
859,023 - A4249_RS04130 0.22 -0.7
859,023 - A4249_RS04130 0.22 -0.5
859,023 - A4249_RS04130 0.22 -0.2
859,023 - A4249_RS04130 0.22 +2.3
859,229 + A4249_RS04130 0.42 -0.3
859,229 + A4249_RS04130 0.42 -0.4
859,229 + A4249_RS04130 0.42 -0.3
859,229 + A4249_RS04130 0.42 -0.6
859,230 - A4249_RS04130 0.43 +0.2
859,230 - A4249_RS04130 0.43 -0.4
859,230 - A4249_RS04130 0.43 -0.1
859,242 - A4249_RS04130 0.44 +0.6
859,292 + A4249_RS04130 0.49 -0.1
859,293 - A4249_RS04130 0.49 -0.1
859,578 + A4249_RS04130 0.77 -0.3
859,578 + A4249_RS04130 0.77 +0.3
859,715 + +0.8
859,715 + +0.1
859,715 + +0.2
859,716 - +1.2
859,819 + -0.3
859,820 - +0.3
859,820 - +0.3
859,872 + +0.3
859,890 - -0.2
860,232 + A4249_RS04135 0.17 -1.1
860,232 + A4249_RS04135 0.17 +0.1
860,232 + A4249_RS04135 0.17 -0.4
860,232 + A4249_RS04135 0.17 +1.1
860,232 + A4249_RS04135 0.17 -0.1
860,232 + A4249_RS04135 0.17 -0.9
860,233 - A4249_RS04135 0.17 +0.1
860,233 - A4249_RS04135 0.17 -2.8
860,233 - A4249_RS04135 0.17 -0.8
860,233 - A4249_RS04135 0.17 -0.9
860,233 - A4249_RS04135 0.17 +0.6
860,233 - A4249_RS04135 0.17 +0.2
860,233 - A4249_RS04135 0.17 -0.8
860,246 + A4249_RS04135 0.17 -0.4
860,246 + A4249_RS04135 0.17 +0.6
860,246 + A4249_RS04135 0.17 +0.3
860,247 - A4249_RS04135 0.17 +0.7
860,247 - A4249_RS04135 0.17 +0.7
860,473 + A4249_RS04135 0.30 -0.7
860,473 + A4249_RS04135 0.30 -0.8
860,473 + A4249_RS04135 0.30 +0.4
860,474 - A4249_RS04135 0.30 -0.5
860,474 - A4249_RS04135 0.30 +0.8
860,474 - A4249_RS04135 0.30 +0.7
860,474 - A4249_RS04135 0.30 +0.1
860,518 + A4249_RS04135 0.32 +0.2
860,518 + A4249_RS04135 0.32 -0.1
860,518 + A4249_RS04135 0.32 +0.3
860,518 + A4249_RS04135 0.32 -3.2
860,518 + A4249_RS04135 0.32 +0.3
860,519 - A4249_RS04135 0.32 +0.2
860,519 - A4249_RS04135 0.32 +0.2
860,519 - A4249_RS04135 0.32 -0.1
860,519 - A4249_RS04135 0.32 -0.6
860,519 - A4249_RS04135 0.32 +0.3
860,626 + A4249_RS04135 0.38 +1.2
860,626 + A4249_RS04135 0.38 +0.2
860,626 + A4249_RS04135 0.38 +0.2
860,626 + A4249_RS04135 0.38 +0.3
860,626 + A4249_RS04135 0.38 -0.3
860,626 + A4249_RS04135 0.38 -2.0
860,627 - A4249_RS04135 0.38 -0.4
860,627 - A4249_RS04135 0.38 +1.9
860,627 - A4249_RS04135 0.38 -1.1
860,674 + A4249_RS04135 0.41 +0.2
860,674 + A4249_RS04135 0.41 -0.1
860,674 + A4249_RS04135 0.41 -0.8
860,674 + A4249_RS04135 0.41 +0.6
860,674 + A4249_RS04135 0.41 +0.0
860,674 + A4249_RS04135 0.41 -2.3
860,675 - A4249_RS04135 0.41 -0.2
860,675 - A4249_RS04135 0.41 +0.2
860,695 + A4249_RS04135 0.42 -0.8
860,696 - A4249_RS04135 0.42 +1.2

Or see this region's nucleotide sequence