Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03500

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03490 and A4249_RS03495 are separated by 96 nucleotidesA4249_RS03495 and A4249_RS03500 are separated by 2 nucleotidesA4249_RS03500 and A4249_RS03505 overlap by 1 nucleotides A4249_RS03490: A4249_RS03490 - LysR family transcriptional regulator, at 727,354 to 728,232 _RS03490 A4249_RS03495: A4249_RS03495 - type 1 glutamine amidotransferase domain-containing protein, at 728,329 to 729,138 _RS03495 A4249_RS03500: A4249_RS03500 - VOC family protein, at 729,141 to 729,596 _RS03500 A4249_RS03505: A4249_RS03505 - NADH:flavin oxidoreductase/NADH oxidase, at 729,596 to 730,702 _RS03505 Position (kb) 729 730Strain fitness (log2 ratio) -2 -1 0 1 2at 728.195 kb on + strandat 728.196 kb on - strandat 728.301 kb on + strandat 728.301 kb on + strandat 728.301 kb on + strandat 728.301 kb on + strandat 728.301 kb on + strandat 728.301 kb on + strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.302 kb on - strandat 728.305 kb on + strandat 728.305 kb on + strandat 728.305 kb on + strandat 728.305 kb on + strandat 728.305 kb on + strandat 728.306 kb on - strandat 728.306 kb on - strandat 728.526 kb on + strand, within A4249_RS03495at 728.526 kb on + strand, within A4249_RS03495at 728.526 kb on + strand, within A4249_RS03495at 728.526 kb on + strand, within A4249_RS03495at 728.526 kb on + strand, within A4249_RS03495at 728.526 kb on + strand, within A4249_RS03495at 728.527 kb on - strand, within A4249_RS03495at 728.527 kb on - strand, within A4249_RS03495at 728.527 kb on - strand, within A4249_RS03495at 728.527 kb on - strand, within A4249_RS03495at 728.527 kb on - strand, within A4249_RS03495at 728.527 kb on - strand, within A4249_RS03495at 728.528 kb on - strand, within A4249_RS03495at 728.536 kb on + strand, within A4249_RS03495at 728.536 kb on + strand, within A4249_RS03495at 728.536 kb on + strand, within A4249_RS03495at 728.537 kb on - strand, within A4249_RS03495at 728.537 kb on - strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.539 kb on + strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.540 kb on - strand, within A4249_RS03495at 728.656 kb on + strand, within A4249_RS03495at 728.656 kb on + strand, within A4249_RS03495at 728.656 kb on + strand, within A4249_RS03495at 728.661 kb on + strand, within A4249_RS03495at 728.688 kb on + strand, within A4249_RS03495at 728.689 kb on - strand, within A4249_RS03495at 728.702 kb on + strand, within A4249_RS03495at 728.703 kb on - strand, within A4249_RS03495at 728.703 kb on - strand, within A4249_RS03495at 728.729 kb on - strand, within A4249_RS03495at 728.774 kb on - strand, within A4249_RS03495at 729.147 kb on + strandat 729.147 kb on + strandat 729.147 kb on + strandat 729.147 kb on + strandat 729.252 kb on + strand, within A4249_RS03500at 729.253 kb on - strand, within A4249_RS03500at 729.264 kb on + strand, within A4249_RS03500at 729.264 kb on + strand, within A4249_RS03500at 729.264 kb on + strand, within A4249_RS03500at 729.264 kb on + strand, within A4249_RS03500at 729.264 kb on + strand, within A4249_RS03500at 729.264 kb on + strand, within A4249_RS03500at 729.265 kb on - strand, within A4249_RS03500at 729.265 kb on - strand, within A4249_RS03500at 729.265 kb on - strand, within A4249_RS03500at 729.265 kb on - strand, within A4249_RS03500at 729.265 kb on - strand, within A4249_RS03500at 729.265 kb on - strand, within A4249_RS03500at 729.265 kb on - strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.330 kb on + strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.331 kb on - strand, within A4249_RS03500at 729.370 kb on - strand, within A4249_RS03500at 729.420 kb on + strand, within A4249_RS03500at 729.420 kb on + strand, within A4249_RS03500at 729.420 kb on + strand, within A4249_RS03500at 729.420 kb on + strand, within A4249_RS03500at 729.420 kb on + strand, within A4249_RS03500at 729.420 kb on + strand, within A4249_RS03500at 729.421 kb on - strand, within A4249_RS03500at 729.421 kb on - strand, within A4249_RS03500at 729.421 kb on - strand, within A4249_RS03500at 729.421 kb on - strand, within A4249_RS03500at 729.421 kb on - strand, within A4249_RS03500at 729.421 kb on - strand, within A4249_RS03500at 729.421 kb on - strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.483 kb on + strand, within A4249_RS03500at 729.484 kb on - strand, within A4249_RS03500at 729.484 kb on - strand, within A4249_RS03500at 729.484 kb on - strand, within A4249_RS03500at 729.484 kb on - strand, within A4249_RS03500at 729.484 kb on - strand, within A4249_RS03500at 729.484 kb on - strand, within A4249_RS03500at 729.484 kb on - strand, within A4249_RS03500at 729.674 kb on + strandat 729.674 kb on + strandat 729.674 kb on + strandat 729.674 kb on + strandat 729.674 kb on + strandat 729.675 kb on - strandat 729.675 kb on - strandat 729.675 kb on - strandat 729.759 kb on + strand, within A4249_RS03505at 729.759 kb on + strand, within A4249_RS03505at 729.759 kb on + strand, within A4249_RS03505at 729.759 kb on + strand, within A4249_RS03505at 729.760 kb on - strand, within A4249_RS03505at 729.760 kb on - strand, within A4249_RS03505at 729.797 kb on + strand, within A4249_RS03505at 729.798 kb on - strand, within A4249_RS03505at 729.798 kb on - strand, within A4249_RS03505at 729.798 kb on - strand, within A4249_RS03505at 729.798 kb on - strand, within A4249_RS03505at 729.815 kb on + strand, within A4249_RS03505at 729.815 kb on + strand, within A4249_RS03505at 729.816 kb on - strand, within A4249_RS03505at 729.816 kb on - strand, within A4249_RS03505at 730.142 kb on + strand, within A4249_RS03505at 730.142 kb on + strand, within A4249_RS03505at 730.142 kb on + strand, within A4249_RS03505at 730.142 kb on + strand, within A4249_RS03505at 730.142 kb on + strand, within A4249_RS03505at 730.142 kb on + strand, within A4249_RS03505at 730.143 kb on - strand, within A4249_RS03505at 730.143 kb on - strand, within A4249_RS03505at 730.143 kb on - strand, within A4249_RS03505at 730.194 kb on - strand, within A4249_RS03505at 730.436 kb on + strand, within A4249_RS03505at 730.437 kb on - strand, within A4249_RS03505

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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728,195 + +0.7
728,196 - -0.2
728,301 + -1.2
728,301 + +0.5
728,301 + +1.0
728,301 + +0.9
728,301 + -0.9
728,301 + -0.6
728,302 - +0.5
728,302 - -1.2
728,302 - -0.4
728,302 - +0.2
728,302 - -0.4
728,302 - -0.3
728,302 - -0.4
728,302 - -0.9
728,302 - -1.4
728,302 - -0.1
728,305 + +0.3
728,305 + +0.4
728,305 + +0.2
728,305 + +0.3
728,305 + -2.3
728,306 - -0.4
728,306 - -0.4
728,526 + A4249_RS03495 0.24 +0.2
728,526 + A4249_RS03495 0.24 -0.1
728,526 + A4249_RS03495 0.24 -0.1
728,526 + A4249_RS03495 0.24 -0.6
728,526 + A4249_RS03495 0.24 +1.2
728,526 + A4249_RS03495 0.24 +0.3
728,527 - A4249_RS03495 0.24 -1.3
728,527 - A4249_RS03495 0.24 +0.6
728,527 - A4249_RS03495 0.24 +0.1
728,527 - A4249_RS03495 0.24 +0.1
728,527 - A4249_RS03495 0.24 -0.8
728,527 - A4249_RS03495 0.24 +0.4
728,528 - A4249_RS03495 0.25 +0.5
728,536 + A4249_RS03495 0.26 +0.7
728,536 + A4249_RS03495 0.26 +0.1
728,536 + A4249_RS03495 0.26 -0.6
728,537 - A4249_RS03495 0.26 +0.0
728,537 - A4249_RS03495 0.26 +0.2
728,539 + A4249_RS03495 0.26 -0.1
728,539 + A4249_RS03495 0.26 -0.3
728,539 + A4249_RS03495 0.26 +1.1
728,539 + A4249_RS03495 0.26 -1.6
728,539 + A4249_RS03495 0.26 -0.4
728,539 + A4249_RS03495 0.26 -0.1
728,539 + A4249_RS03495 0.26 +1.7
728,539 + A4249_RS03495 0.26 +0.7
728,539 + A4249_RS03495 0.26 +0.2
728,539 + A4249_RS03495 0.26 -0.4
728,539 + A4249_RS03495 0.26 -0.4
728,540 - A4249_RS03495 0.26 -0.6
728,540 - A4249_RS03495 0.26 +0.6
728,540 - A4249_RS03495 0.26 +0.3
728,540 - A4249_RS03495 0.26 +0.1
728,540 - A4249_RS03495 0.26 +0.0
728,540 - A4249_RS03495 0.26 +0.4
728,540 - A4249_RS03495 0.26 -0.1
728,540 - A4249_RS03495 0.26 -0.1
728,656 + A4249_RS03495 0.40 +0.3
728,656 + A4249_RS03495 0.40 +1.0
728,656 + A4249_RS03495 0.40 +1.0
728,661 + A4249_RS03495 0.41 -0.1
728,688 + A4249_RS03495 0.44 -0.9
728,689 - A4249_RS03495 0.44 -0.6
728,702 + A4249_RS03495 0.46 +0.7
728,703 - A4249_RS03495 0.46 +0.4
728,703 - A4249_RS03495 0.46 -1.8
728,729 - A4249_RS03495 0.49 +0.2
728,774 - A4249_RS03495 0.55 -0.6
729,147 + +0.6
729,147 + +0.5
729,147 + -0.3
729,147 + -0.1
729,252 + A4249_RS03500 0.24 -0.2
729,253 - A4249_RS03500 0.25 +0.2
729,264 + A4249_RS03500 0.27 -1.7
729,264 + A4249_RS03500 0.27 -0.3
729,264 + A4249_RS03500 0.27 +0.3
729,264 + A4249_RS03500 0.27 +0.4
729,264 + A4249_RS03500 0.27 -0.3
729,264 + A4249_RS03500 0.27 +0.0
729,265 - A4249_RS03500 0.27 +0.5
729,265 - A4249_RS03500 0.27 -2.5
729,265 - A4249_RS03500 0.27 -2.5
729,265 - A4249_RS03500 0.27 -0.3
729,265 - A4249_RS03500 0.27 -0.3
729,265 - A4249_RS03500 0.27 -0.3
729,265 - A4249_RS03500 0.27 -1.5
729,330 + A4249_RS03500 0.41 -1.6
729,330 + A4249_RS03500 0.41 -0.4
729,330 + A4249_RS03500 0.41 -0.1
729,330 + A4249_RS03500 0.41 +0.1
729,330 + A4249_RS03500 0.41 -0.2
729,330 + A4249_RS03500 0.41 -0.1
729,330 + A4249_RS03500 0.41 -2.0
729,330 + A4249_RS03500 0.41 -0.9
729,331 - A4249_RS03500 0.42 -0.3
729,331 - A4249_RS03500 0.42 -0.7
729,331 - A4249_RS03500 0.42 +0.8
729,331 - A4249_RS03500 0.42 +0.1
729,331 - A4249_RS03500 0.42 +0.2
729,331 - A4249_RS03500 0.42 -0.7
729,331 - A4249_RS03500 0.42 +1.0
729,331 - A4249_RS03500 0.42 -0.2
729,331 - A4249_RS03500 0.42 -0.5
729,370 - A4249_RS03500 0.50 -1.2
729,420 + A4249_RS03500 0.61 -0.8
729,420 + A4249_RS03500 0.61 +1.1
729,420 + A4249_RS03500 0.61 +1.3
729,420 + A4249_RS03500 0.61 +0.1
729,420 + A4249_RS03500 0.61 -1.5
729,420 + A4249_RS03500 0.61 +0.9
729,421 - A4249_RS03500 0.61 -0.1
729,421 - A4249_RS03500 0.61 -0.0
729,421 - A4249_RS03500 0.61 -0.5
729,421 - A4249_RS03500 0.61 -0.6
729,421 - A4249_RS03500 0.61 +0.1
729,421 - A4249_RS03500 0.61 -1.0
729,421 - A4249_RS03500 0.61 +0.0
729,483 + A4249_RS03500 0.75 +1.1
729,483 + A4249_RS03500 0.75 -0.3
729,483 + A4249_RS03500 0.75 +1.1
729,483 + A4249_RS03500 0.75 +0.3
729,483 + A4249_RS03500 0.75 -1.2
729,483 + A4249_RS03500 0.75 -0.2
729,483 + A4249_RS03500 0.75 -0.0
729,483 + A4249_RS03500 0.75 +1.9
729,483 + A4249_RS03500 0.75 +0.2
729,483 + A4249_RS03500 0.75 +0.0
729,484 - A4249_RS03500 0.75 +0.8
729,484 - A4249_RS03500 0.75 -0.1
729,484 - A4249_RS03500 0.75 -0.4
729,484 - A4249_RS03500 0.75 -0.1
729,484 - A4249_RS03500 0.75 +0.4
729,484 - A4249_RS03500 0.75 -0.0
729,484 - A4249_RS03500 0.75 +0.0
729,674 + +0.2
729,674 + -0.3
729,674 + +0.1
729,674 + +0.6
729,674 + -0.0
729,675 - +0.5
729,675 - -0.4
729,675 - +0.7
729,759 + A4249_RS03505 0.15 -0.8
729,759 + A4249_RS03505 0.15 +1.0
729,759 + A4249_RS03505 0.15 +0.7
729,759 + A4249_RS03505 0.15 -0.5
729,760 - A4249_RS03505 0.15 -0.0
729,760 - A4249_RS03505 0.15 -0.2
729,797 + A4249_RS03505 0.18 +1.0
729,798 - A4249_RS03505 0.18 +0.4
729,798 - A4249_RS03505 0.18 +0.5
729,798 - A4249_RS03505 0.18 -1.3
729,798 - A4249_RS03505 0.18 -1.0
729,815 + A4249_RS03505 0.20 -0.3
729,815 + A4249_RS03505 0.20 +0.5
729,816 - A4249_RS03505 0.20 +0.0
729,816 - A4249_RS03505 0.20 -0.1
730,142 + A4249_RS03505 0.49 -0.7
730,142 + A4249_RS03505 0.49 +0.0
730,142 + A4249_RS03505 0.49 +0.4
730,142 + A4249_RS03505 0.49 -0.5
730,142 + A4249_RS03505 0.49 -2.4
730,142 + A4249_RS03505 0.49 -1.0
730,143 - A4249_RS03505 0.49 +1.2
730,143 - A4249_RS03505 0.49 -0.3
730,143 - A4249_RS03505 0.49 +0.1
730,194 - A4249_RS03505 0.54 +0.9
730,436 + A4249_RS03505 0.76 +0.2
730,437 - A4249_RS03505 0.76 -1.3

Or see this region's nucleotide sequence