Experiment: Hypoxanthine 0.7347 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03405 and A4249_RS03410 are separated by 102 nucleotides A4249_RS03410 and A4249_RS03415 are separated by 66 nucleotides A4249_RS03415 and A4249_RS03420 are separated by 185 nucleotides A4249_RS03420 and A4249_RS03425 are separated by 21 nucleotides
A4249_RS03405: A4249_RS03405 - alpha/beta hydrolase-fold protein, at 714,755 to 715,273
_RS03405
A4249_RS03410: A4249_RS03410 - tyrosine-type recombinase/integrase, at 715,376 to 716,002
_RS03410
A4249_RS03415: A4249_RS03415 - TetR/AcrR family transcriptional regulator, at 716,069 to 716,638
_RS03415
A4249_RS03420: A4249_RS03420 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 716,824 to 717,408
_RS03420
A4249_RS03425: A4249_RS03425 - hypothetical protein, at 717,430 to 718,635
_RS03425
Position (kb)
716
717 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 715.071 kb on - strand, within A4249_RS03405 at 715.071 kb on - strand, within A4249_RS03405 at 715.082 kb on + strand, within A4249_RS03405 at 715.082 kb on + strand, within A4249_RS03405 at 715.083 kb on - strand, within A4249_RS03405 at 715.083 kb on - strand, within A4249_RS03405 at 715.100 kb on + strand, within A4249_RS03405 at 715.100 kb on + strand, within A4249_RS03405 at 715.100 kb on + strand, within A4249_RS03405 at 715.100 kb on + strand, within A4249_RS03405 at 715.100 kb on + strand, within A4249_RS03405 at 715.100 kb on + strand, within A4249_RS03405 at 715.100 kb on + strand, within A4249_RS03405 at 715.101 kb on - strand, within A4249_RS03405 at 715.101 kb on - strand, within A4249_RS03405 at 715.101 kb on - strand, within A4249_RS03405 at 715.101 kb on - strand, within A4249_RS03405 at 715.101 kb on - strand, within A4249_RS03405 at 715.101 kb on - strand, within A4249_RS03405 at 715.128 kb on + strand, within A4249_RS03405 at 715.129 kb on - strand, within A4249_RS03405 at 715.271 kb on + strand at 715.271 kb on + strand at 715.271 kb on + strand at 715.271 kb on + strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.272 kb on - strand at 715.283 kb on - strand at 715.333 kb on + strand at 715.333 kb on + strand at 715.333 kb on + strand at 715.333 kb on + strand at 715.334 kb on - strand at 715.334 kb on - strand at 715.334 kb on - strand at 715.334 kb on - strand at 715.334 kb on - strand at 715.334 kb on - strand at 715.334 kb on - strand at 715.506 kb on + strand, within A4249_RS03410 at 715.525 kb on + strand, within A4249_RS03410 at 715.525 kb on + strand, within A4249_RS03410 at 715.525 kb on + strand, within A4249_RS03410 at 715.526 kb on - strand, within A4249_RS03410 at 715.526 kb on - strand, within A4249_RS03410 at 715.526 kb on - strand, within A4249_RS03410 at 715.606 kb on + strand, within A4249_RS03410 at 715.606 kb on + strand, within A4249_RS03410 at 715.607 kb on - strand, within A4249_RS03410 at 715.607 kb on - strand, within A4249_RS03410 at 715.607 kb on - strand, within A4249_RS03410 at 715.607 kb on - strand, within A4249_RS03410 at 715.778 kb on + strand, within A4249_RS03410 at 715.779 kb on - strand, within A4249_RS03410 at 715.779 kb on - strand, within A4249_RS03410 at 715.779 kb on - strand, within A4249_RS03410 at 715.779 kb on - strand, within A4249_RS03410 at 715.812 kb on + strand, within A4249_RS03410 at 715.812 kb on + strand, within A4249_RS03410 at 715.812 kb on + strand, within A4249_RS03410 at 715.812 kb on + strand, within A4249_RS03410 at 715.813 kb on - strand, within A4249_RS03410 at 715.813 kb on - strand, within A4249_RS03410 at 715.813 kb on - strand, within A4249_RS03410 at 715.813 kb on - strand, within A4249_RS03410 at 715.813 kb on - strand, within A4249_RS03410 at 715.875 kb on - strand, within A4249_RS03410 at 715.875 kb on - strand, within A4249_RS03410 at 715.941 kb on + strand at 715.941 kb on + strand at 715.941 kb on + strand at 715.941 kb on + strand at 715.941 kb on + strand at 715.941 kb on + strand at 715.941 kb on + strand at 715.941 kb on + strand at 715.942 kb on - strand at 715.942 kb on - strand at 715.942 kb on - strand at 715.942 kb on - strand at 715.942 kb on - strand at 715.942 kb on - strand at 715.942 kb on - strand at 715.946 kb on + strand at 715.946 kb on + strand at 715.946 kb on + strand at 715.946 kb on + strand at 715.947 kb on - strand at 715.947 kb on - strand at 716.124 kb on - strand at 716.124 kb on - strand at 716.155 kb on + strand, within A4249_RS03415 at 716.155 kb on + strand, within A4249_RS03415 at 716.155 kb on + strand, within A4249_RS03415 at 716.155 kb on + strand, within A4249_RS03415 at 716.156 kb on - strand, within A4249_RS03415 at 716.156 kb on - strand, within A4249_RS03415 at 716.156 kb on - strand, within A4249_RS03415 at 716.156 kb on - strand, within A4249_RS03415 at 716.156 kb on - strand, within A4249_RS03415 at 716.156 kb on - strand, within A4249_RS03415 at 716.183 kb on - strand, within A4249_RS03415 at 716.200 kb on + strand, within A4249_RS03415 at 716.200 kb on + strand, within A4249_RS03415 at 716.201 kb on - strand, within A4249_RS03415 at 716.302 kb on + strand, within A4249_RS03415 at 716.302 kb on + strand, within A4249_RS03415 at 716.303 kb on - strand, within A4249_RS03415 at 716.484 kb on + strand, within A4249_RS03415 at 716.484 kb on + strand, within A4249_RS03415 at 716.485 kb on - strand, within A4249_RS03415 at 716.485 kb on - strand, within A4249_RS03415 at 716.527 kb on + strand, within A4249_RS03415 at 716.527 kb on + strand, within A4249_RS03415 at 716.527 kb on + strand, within A4249_RS03415 at 716.528 kb on - strand, within A4249_RS03415 at 716.602 kb on + strand at 716.638 kb on + strand at 716.638 kb on + strand at 716.638 kb on + strand at 716.638 kb on + strand at 716.639 kb on - strand at 716.639 kb on - strand at 716.639 kb on - strand at 716.639 kb on - strand at 716.639 kb on - strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.647 kb on + strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.648 kb on - strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.663 kb on + strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.664 kb on - strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.667 kb on + strand at 716.668 kb on - strand at 716.668 kb on - strand at 716.668 kb on - strand at 716.668 kb on - strand at 716.668 kb on - strand at 716.668 kb on - strand at 716.668 kb on - strand at 716.668 kb on - strand at 716.825 kb on + strand at 716.825 kb on + strand at 716.918 kb on + strand, within A4249_RS03420 at 716.918 kb on + strand, within A4249_RS03420 at 716.918 kb on + strand, within A4249_RS03420 at 716.919 kb on - strand, within A4249_RS03420 at 716.919 kb on - strand, within A4249_RS03420 at 716.919 kb on - strand, within A4249_RS03420 at 716.919 kb on - strand, within A4249_RS03420 at 717.029 kb on + strand, within A4249_RS03420 at 717.029 kb on + strand, within A4249_RS03420 at 717.030 kb on - strand, within A4249_RS03420 at 717.030 kb on - strand, within A4249_RS03420 at 717.045 kb on + strand, within A4249_RS03420 at 717.046 kb on - strand, within A4249_RS03420 at 717.046 kb on - strand, within A4249_RS03420 at 717.074 kb on + strand, within A4249_RS03420 at 717.075 kb on - strand, within A4249_RS03420 at 717.075 kb on - strand, within A4249_RS03420 at 717.332 kb on + strand, within A4249_RS03420 at 717.333 kb on - strand, within A4249_RS03420 at 717.333 kb on - strand, within A4249_RS03420 at 717.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C) remove 715,071 - A4249_RS03405 0.61 +0.3 715,071 - A4249_RS03405 0.61 +0.0 715,082 + A4249_RS03405 0.63 -1.2 715,082 + A4249_RS03405 0.63 -0.8 715,083 - A4249_RS03405 0.63 +0.9 715,083 - A4249_RS03405 0.63 -0.1 715,100 + A4249_RS03405 0.66 -1.2 715,100 + A4249_RS03405 0.66 -0.2 715,100 + A4249_RS03405 0.66 -0.6 715,100 + A4249_RS03405 0.66 +0.5 715,100 + A4249_RS03405 0.66 +0.4 715,100 + A4249_RS03405 0.66 -0.1 715,100 + A4249_RS03405 0.66 +0.5 715,101 - A4249_RS03405 0.67 -0.4 715,101 - A4249_RS03405 0.67 -0.6 715,101 - A4249_RS03405 0.67 -1.6 715,101 - A4249_RS03405 0.67 +0.3 715,101 - A4249_RS03405 0.67 -1.1 715,101 - A4249_RS03405 0.67 -0.5 715,128 + A4249_RS03405 0.72 -0.4 715,129 - A4249_RS03405 0.72 +0.3 715,271 + +0.5 715,271 + -0.1 715,271 + -0.1 715,271 + +0.5 715,272 - +0.4 715,272 - -0.6 715,272 - -0.1 715,272 - +0.4 715,272 - +0.5 715,272 - -0.4 715,272 - -1.2 715,272 - -0.0 715,272 - -0.3 715,272 - +0.6 715,283 - +0.1 715,333 + +0.1 715,333 + -0.2 715,333 + -0.2 715,333 + +0.0 715,334 - -1.0 715,334 - +0.8 715,334 - -0.7 715,334 - -0.5 715,334 - +0.9 715,334 - -1.7 715,334 - -0.8 715,506 + A4249_RS03410 0.21 -0.1 715,525 + A4249_RS03410 0.24 -0.7 715,525 + A4249_RS03410 0.24 -0.8 715,525 + A4249_RS03410 0.24 -0.5 715,526 - A4249_RS03410 0.24 +0.3 715,526 - A4249_RS03410 0.24 +0.5 715,526 - A4249_RS03410 0.24 -0.1 715,606 + A4249_RS03410 0.37 +0.3 715,606 + A4249_RS03410 0.37 -0.1 715,607 - A4249_RS03410 0.37 +1.3 715,607 - A4249_RS03410 0.37 -2.2 715,607 - A4249_RS03410 0.37 -0.0 715,607 - A4249_RS03410 0.37 -0.0 715,778 + A4249_RS03410 0.64 -0.5 715,779 - A4249_RS03410 0.64 +0.4 715,779 - A4249_RS03410 0.64 -0.3 715,779 - A4249_RS03410 0.64 +0.1 715,779 - A4249_RS03410 0.64 +0.5 715,812 + A4249_RS03410 0.70 -0.8 715,812 + A4249_RS03410 0.70 +1.2 715,812 + A4249_RS03410 0.70 -0.5 715,812 + A4249_RS03410 0.70 -0.4 715,813 - A4249_RS03410 0.70 +0.5 715,813 - A4249_RS03410 0.70 -0.2 715,813 - A4249_RS03410 0.70 +0.0 715,813 - A4249_RS03410 0.70 +0.8 715,813 - A4249_RS03410 0.70 -2.1 715,875 - A4249_RS03410 0.80 -0.1 715,875 - A4249_RS03410 0.80 -0.4 715,941 + -0.6 715,941 + -0.9 715,941 + -0.1 715,941 + +0.0 715,941 + +0.9 715,941 + +0.7 715,941 + +0.2 715,941 + +0.3 715,942 - -0.5 715,942 - -0.5 715,942 - +0.3 715,942 - -0.0 715,942 - -0.6 715,942 - +0.3 715,942 - +0.5 715,946 + -1.2 715,946 + -2.0 715,946 + +1.8 715,946 + -0.0 715,947 - -0.1 715,947 - +1.3 716,124 - -0.7 716,124 - +1.1 716,155 + A4249_RS03415 0.15 -0.4 716,155 + A4249_RS03415 0.15 +0.1 716,155 + A4249_RS03415 0.15 -1.0 716,155 + A4249_RS03415 0.15 +1.5 716,156 - A4249_RS03415 0.15 +0.4 716,156 - A4249_RS03415 0.15 +0.1 716,156 - A4249_RS03415 0.15 +1.1 716,156 - A4249_RS03415 0.15 +0.9 716,156 - A4249_RS03415 0.15 -0.8 716,156 - A4249_RS03415 0.15 +1.0 716,183 - A4249_RS03415 0.20 +0.7 716,200 + A4249_RS03415 0.23 -0.2 716,200 + A4249_RS03415 0.23 +0.3 716,201 - A4249_RS03415 0.23 -0.2 716,302 + A4249_RS03415 0.41 +1.6 716,302 + A4249_RS03415 0.41 -0.3 716,303 - A4249_RS03415 0.41 +0.3 716,484 + A4249_RS03415 0.73 -0.1 716,484 + A4249_RS03415 0.73 +0.2 716,485 - A4249_RS03415 0.73 -0.2 716,485 - A4249_RS03415 0.73 +0.1 716,527 + A4249_RS03415 0.80 -0.7 716,527 + A4249_RS03415 0.80 +0.8 716,527 + A4249_RS03415 0.80 -0.9 716,528 - A4249_RS03415 0.81 +0.6 716,602 + +0.3 716,638 + -0.5 716,638 + -0.1 716,638 + +0.6 716,638 + -0.5 716,639 - -0.2 716,639 - -0.8 716,639 - +0.5 716,639 - +0.8 716,639 - +2.1 716,647 + -0.6 716,647 + -1.5 716,647 + -0.4 716,647 + -0.4 716,647 + -0.1 716,647 + -0.2 716,647 + +1.3 716,647 + +0.2 716,647 + +0.2 716,647 + +0.8 716,647 + -2.0 716,648 - -0.9 716,648 - +0.8 716,648 - +0.4 716,648 - -0.4 716,648 - -0.2 716,648 - -0.0 716,648 - +0.0 716,648 - +0.1 716,648 - -0.5 716,648 - +0.5 716,663 + -0.1 716,663 + +0.2 716,663 + -1.6 716,663 + -0.3 716,663 + +1.0 716,663 + +0.3 716,663 + +0.5 716,663 + +0.2 716,663 + +0.4 716,663 + +0.7 716,664 - +1.8 716,664 - +0.4 716,664 - -0.7 716,664 - -0.2 716,664 - +0.8 716,664 - -0.8 716,664 - -0.2 716,664 - -0.2 716,664 - +0.9 716,667 + -0.7 716,667 + -0.0 716,667 + +0.3 716,667 + +0.1 716,667 + +0.8 716,667 + -0.4 716,667 + -0.4 716,667 + +0.3 716,667 + +0.3 716,668 - +0.4 716,668 - -0.1 716,668 - -0.5 716,668 - +0.3 716,668 - +1.0 716,668 - -0.0 716,668 - +1.0 716,668 - -0.5 716,825 + -0.1 716,825 + +0.5 716,918 + A4249_RS03420 0.16 -1.1 716,918 + A4249_RS03420 0.16 +0.3 716,918 + A4249_RS03420 0.16 -1.2 716,919 - A4249_RS03420 0.16 -0.1 716,919 - A4249_RS03420 0.16 +0.2 716,919 - A4249_RS03420 0.16 -0.2 716,919 - A4249_RS03420 0.16 -0.1 717,029 + A4249_RS03420 0.35 +0.9 717,029 + A4249_RS03420 0.35 +0.1 717,030 - A4249_RS03420 0.35 -0.3 717,030 - A4249_RS03420 0.35 -0.9 717,045 + A4249_RS03420 0.38 +1.6 717,046 - A4249_RS03420 0.38 +0.6 717,046 - A4249_RS03420 0.38 +0.2 717,074 + A4249_RS03420 0.43 -0.1 717,075 - A4249_RS03420 0.43 +0.3 717,075 - A4249_RS03420 0.43 -0.2 717,332 + A4249_RS03420 0.87 -0.4 717,333 - A4249_RS03420 0.87 +0.1 717,333 - A4249_RS03420 0.87 +0.2 717,461 + -0.2
Or see this region's nucleotide sequence