Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00905

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00895 and A4249_RS00900 are separated by 185 nucleotidesA4249_RS00900 and A4249_RS00905 are separated by 148 nucleotidesA4249_RS00905 and A4249_RS00910 overlap by 4 nucleotidesA4249_RS00910 and A4249_RS00915 overlap by 4 nucleotides A4249_RS00895: A4249_RS00895 - DUF1476 domain-containing protein, at 165,993 to 166,316 _RS00895 A4249_RS00900: A4249_RS00900 - fasciclin domain-containing protein, at 166,502 to 167,134 _RS00900 A4249_RS00905: A4249_RS00905 - DNA-deoxyinosine glycosylase, at 167,283 to 167,792 _RS00905 A4249_RS00910: A4249_RS00910 - 2OG-Fe(II) oxygenase family protein, at 167,789 to 168,517 _RS00910 A4249_RS00915: A4249_RS00915 - hypothetical protein, at 168,514 to 168,849 _RS00915 Position (kb) 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.314 kb on + strandat 166.315 kb on - strandat 166.423 kb on + strandat 166.423 kb on + strandat 166.423 kb on + strandat 166.423 kb on + strandat 166.423 kb on + strandat 166.423 kb on + strandat 166.424 kb on - strandat 166.424 kb on - strandat 166.424 kb on - strandat 166.497 kb on - strandat 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.734 kb on + strand, within A4249_RS00900at 166.735 kb on - strand, within A4249_RS00900at 166.735 kb on - strand, within A4249_RS00900at 166.735 kb on - strand, within A4249_RS00900at 166.735 kb on - strand, within A4249_RS00900at 166.735 kb on - strand, within A4249_RS00900at 166.939 kb on + strand, within A4249_RS00900at 166.940 kb on - strand, within A4249_RS00900at 166.940 kb on - strand, within A4249_RS00900at 167.114 kb on - strandat 167.114 kb on - strandat 167.114 kb on - strandat 167.114 kb on - strandat 167.284 kb on + strandat 167.284 kb on + strandat 167.285 kb on - strandat 167.285 kb on - strandat 167.285 kb on - strandat 167.674 kb on + strand, within A4249_RS00905at 167.674 kb on + strand, within A4249_RS00905at 167.674 kb on + strand, within A4249_RS00905at 167.674 kb on + strand, within A4249_RS00905at 167.674 kb on + strand, within A4249_RS00905at 167.674 kb on + strand, within A4249_RS00905at 167.674 kb on + strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.675 kb on - strand, within A4249_RS00905at 167.677 kb on + strand, within A4249_RS00905at 167.677 kb on + strand, within A4249_RS00905at 167.677 kb on + strand, within A4249_RS00905at 167.678 kb on - strand, within A4249_RS00905at 167.780 kb on + strandat 167.780 kb on + strandat 167.780 kb on + strandat 167.850 kb on + strandat 167.851 kb on - strandat 167.851 kb on - strandat 167.851 kb on - strandat 167.851 kb on - strandat 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.007 kb on + strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.008 kb on - strand, within A4249_RS00910at 168.009 kb on + strand, within A4249_RS00910at 168.009 kb on + strand, within A4249_RS00910at 168.009 kb on + strand, within A4249_RS00910at 168.009 kb on + strand, within A4249_RS00910at 168.009 kb on + strand, within A4249_RS00910at 168.009 kb on + strand, within A4249_RS00910at 168.010 kb on - strand, within A4249_RS00910at 168.010 kb on - strand, within A4249_RS00910at 168.010 kb on - strand, within A4249_RS00910at 168.010 kb on - strand, within A4249_RS00910at 168.225 kb on + strand, within A4249_RS00910at 168.234 kb on + strand, within A4249_RS00910at 168.234 kb on + strand, within A4249_RS00910at 168.234 kb on + strand, within A4249_RS00910at 168.234 kb on + strand, within A4249_RS00910at 168.234 kb on + strand, within A4249_RS00910at 168.234 kb on + strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.235 kb on - strand, within A4249_RS00910at 168.278 kb on + strand, within A4249_RS00910at 168.278 kb on + strand, within A4249_RS00910at 168.278 kb on + strand, within A4249_RS00910at 168.278 kb on + strand, within A4249_RS00910at 168.278 kb on + strand, within A4249_RS00910at 168.279 kb on - strand, within A4249_RS00910at 168.279 kb on - strand, within A4249_RS00910at 168.279 kb on - strand, within A4249_RS00910at 168.459 kb on + strandat 168.460 kb on - strandat 168.460 kb on - strandat 168.460 kb on - strandat 168.460 kb on - strandat 168.471 kb on + strandat 168.472 kb on - strandat 168.472 kb on - strandat 168.496 kb on + strandat 168.594 kb on + strand, within A4249_RS00915at 168.595 kb on - strand, within A4249_RS00915at 168.595 kb on - strand, within A4249_RS00915at 168.595 kb on - strand, within A4249_RS00915at 168.627 kb on + strand, within A4249_RS00915at 168.627 kb on + strand, within A4249_RS00915at 168.627 kb on + strand, within A4249_RS00915at 168.627 kb on + strand, within A4249_RS00915at 168.627 kb on + strand, within A4249_RS00915at 168.627 kb on + strand, within A4249_RS00915at 168.627 kb on + strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.628 kb on - strand, within A4249_RS00915at 168.768 kb on + strand, within A4249_RS00915at 168.768 kb on + strand, within A4249_RS00915at 168.769 kb on - strand, within A4249_RS00915at 168.769 kb on - strand, within A4249_RS00915at 168.769 kb on - strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.776 kb on + strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915at 168.777 kb on - strand, within A4249_RS00915

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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166,314 + +1.0
166,315 - -0.3
166,423 + +0.0
166,423 + -0.5
166,423 + +0.3
166,423 + -0.3
166,423 + -0.3
166,423 + -0.0
166,424 - +0.1
166,424 - -1.1
166,424 - -0.1
166,497 - -0.7
166,734 + A4249_RS00900 0.37 +0.3
166,734 + A4249_RS00900 0.37 +0.7
166,734 + A4249_RS00900 0.37 -0.0
166,734 + A4249_RS00900 0.37 -1.5
166,734 + A4249_RS00900 0.37 -0.1
166,734 + A4249_RS00900 0.37 -0.3
166,734 + A4249_RS00900 0.37 +1.9
166,734 + A4249_RS00900 0.37 +0.5
166,734 + A4249_RS00900 0.37 -0.8
166,735 - A4249_RS00900 0.37 +0.8
166,735 - A4249_RS00900 0.37 +0.0
166,735 - A4249_RS00900 0.37 -2.3
166,735 - A4249_RS00900 0.37 -0.1
166,735 - A4249_RS00900 0.37 -0.1
166,939 + A4249_RS00900 0.69 -0.6
166,940 - A4249_RS00900 0.69 +0.4
166,940 - A4249_RS00900 0.69 -0.4
167,114 - -0.0
167,114 - -1.1
167,114 - +0.3
167,114 - -1.7
167,284 + -0.2
167,284 + -0.1
167,285 - -1.5
167,285 - -0.1
167,285 - +0.5
167,674 + A4249_RS00905 0.77 -0.3
167,674 + A4249_RS00905 0.77 -0.4
167,674 + A4249_RS00905 0.77 +0.2
167,674 + A4249_RS00905 0.77 +0.2
167,674 + A4249_RS00905 0.77 -0.9
167,674 + A4249_RS00905 0.77 +0.1
167,674 + A4249_RS00905 0.77 -0.2
167,675 - A4249_RS00905 0.77 -0.4
167,675 - A4249_RS00905 0.77 -0.3
167,675 - A4249_RS00905 0.77 -3.2
167,675 - A4249_RS00905 0.77 -0.0
167,675 - A4249_RS00905 0.77 +0.4
167,675 - A4249_RS00905 0.77 -0.6
167,675 - A4249_RS00905 0.77 -0.1
167,675 - A4249_RS00905 0.77 -0.3
167,677 + A4249_RS00905 0.77 +0.5
167,677 + A4249_RS00905 0.77 -1.2
167,677 + A4249_RS00905 0.77 -2.4
167,678 - A4249_RS00905 0.77 -1.7
167,780 + -0.4
167,780 + -0.7
167,780 + -0.1
167,850 + -0.3
167,851 - +0.5
167,851 - +0.8
167,851 - +0.8
167,851 - -0.0
168,007 + A4249_RS00910 0.30 -0.1
168,007 + A4249_RS00910 0.30 -0.1
168,007 + A4249_RS00910 0.30 -0.3
168,007 + A4249_RS00910 0.30 -0.3
168,007 + A4249_RS00910 0.30 -0.5
168,007 + A4249_RS00910 0.30 +0.5
168,007 + A4249_RS00910 0.30 -0.0
168,007 + A4249_RS00910 0.30 +0.7
168,007 + A4249_RS00910 0.30 +0.6
168,008 - A4249_RS00910 0.30 -0.9
168,008 - A4249_RS00910 0.30 +1.1
168,008 - A4249_RS00910 0.30 -1.0
168,008 - A4249_RS00910 0.30 -0.2
168,008 - A4249_RS00910 0.30 -0.1
168,008 - A4249_RS00910 0.30 -0.3
168,008 - A4249_RS00910 0.30 +0.1
168,008 - A4249_RS00910 0.30 +0.1
168,008 - A4249_RS00910 0.30 -0.9
168,009 + A4249_RS00910 0.30 +0.1
168,009 + A4249_RS00910 0.30 +0.2
168,009 + A4249_RS00910 0.30 -0.2
168,009 + A4249_RS00910 0.30 +1.1
168,009 + A4249_RS00910 0.30 +0.5
168,009 + A4249_RS00910 0.30 +0.6
168,010 - A4249_RS00910 0.30 -0.2
168,010 - A4249_RS00910 0.30 -0.0
168,010 - A4249_RS00910 0.30 +0.3
168,010 - A4249_RS00910 0.30 +0.4
168,225 + A4249_RS00910 0.60 +0.0
168,234 + A4249_RS00910 0.61 -1.3
168,234 + A4249_RS00910 0.61 -0.9
168,234 + A4249_RS00910 0.61 -0.2
168,234 + A4249_RS00910 0.61 +0.1
168,234 + A4249_RS00910 0.61 +0.4
168,234 + A4249_RS00910 0.61 -0.1
168,235 - A4249_RS00910 0.61 +1.0
168,235 - A4249_RS00910 0.61 +0.2
168,235 - A4249_RS00910 0.61 -0.0
168,235 - A4249_RS00910 0.61 -0.2
168,235 - A4249_RS00910 0.61 -1.1
168,235 - A4249_RS00910 0.61 -0.3
168,235 - A4249_RS00910 0.61 -0.7
168,235 - A4249_RS00910 0.61 +0.3
168,235 - A4249_RS00910 0.61 +0.9
168,235 - A4249_RS00910 0.61 -0.2
168,235 - A4249_RS00910 0.61 -1.0
168,278 + A4249_RS00910 0.67 -1.0
168,278 + A4249_RS00910 0.67 -1.0
168,278 + A4249_RS00910 0.67 +0.1
168,278 + A4249_RS00910 0.67 -1.0
168,278 + A4249_RS00910 0.67 +0.5
168,279 - A4249_RS00910 0.67 +0.3
168,279 - A4249_RS00910 0.67 -0.2
168,279 - A4249_RS00910 0.67 -0.4
168,459 + -0.2
168,460 - -0.5
168,460 - +0.3
168,460 - -0.9
168,460 - -0.6
168,471 + -0.2
168,472 - +0.8
168,472 - +0.7
168,496 + +0.1
168,594 + A4249_RS00915 0.24 -1.9
168,595 - A4249_RS00915 0.24 -0.8
168,595 - A4249_RS00915 0.24 +0.1
168,595 - A4249_RS00915 0.24 +0.3
168,627 + A4249_RS00915 0.34 -1.3
168,627 + A4249_RS00915 0.34 -0.0
168,627 + A4249_RS00915 0.34 -1.1
168,627 + A4249_RS00915 0.34 +0.5
168,627 + A4249_RS00915 0.34 +1.7
168,627 + A4249_RS00915 0.34 -0.1
168,627 + A4249_RS00915 0.34 +0.4
168,628 - A4249_RS00915 0.34 -0.6
168,628 - A4249_RS00915 0.34 -1.5
168,628 - A4249_RS00915 0.34 +0.2
168,628 - A4249_RS00915 0.34 -0.7
168,628 - A4249_RS00915 0.34 +0.5
168,628 - A4249_RS00915 0.34 +0.3
168,628 - A4249_RS00915 0.34 +0.1
168,628 - A4249_RS00915 0.34 +0.7
168,628 - A4249_RS00915 0.34 -1.5
168,628 - A4249_RS00915 0.34 +0.0
168,768 + A4249_RS00915 0.76 -0.5
168,768 + A4249_RS00915 0.76 +0.4
168,769 - A4249_RS00915 0.76 -2.3
168,769 - A4249_RS00915 0.76 -1.1
168,769 - A4249_RS00915 0.76 -2.3
168,776 + A4249_RS00915 0.78 +0.4
168,776 + A4249_RS00915 0.78 +1.3
168,776 + A4249_RS00915 0.78 -0.4
168,776 + A4249_RS00915 0.78 -0.1
168,776 + A4249_RS00915 0.78 -0.3
168,776 + A4249_RS00915 0.78 -0.2
168,776 + A4249_RS00915 0.78 -0.9
168,776 + A4249_RS00915 0.78 +0.4
168,776 + A4249_RS00915 0.78 -1.2
168,776 + A4249_RS00915 0.78 -1.7
168,776 + A4249_RS00915 0.78 +0.2
168,776 + A4249_RS00915 0.78 -0.4
168,776 + A4249_RS00915 0.78 +0.3
168,777 - A4249_RS00915 0.78 +0.9
168,777 - A4249_RS00915 0.78 -0.7
168,777 - A4249_RS00915 0.78 +0.2
168,777 - A4249_RS00915 0.78 -0.3
168,777 - A4249_RS00915 0.78 -0.2
168,777 - A4249_RS00915 0.78 -0.6
168,777 - A4249_RS00915 0.78 -0.2
168,777 - A4249_RS00915 0.78 +0.5
168,777 - A4249_RS00915 0.78 -0.3
168,777 - A4249_RS00915 0.78 -0.8
168,777 - A4249_RS00915 0.78 +0.6

Or see this region's nucleotide sequence