Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegH and wza are separated by 658 nucleotides wza and wzb are separated by 5 nucleotides wzb and wzc are separated by 2 nucleotides
JDDGAC_28405: yegH - UPF0053 protein YegH, at 5,444,376 to 5,445,959
yegH
JDDGAC_28410: wza - polysaccharide export protein Wza, at 5,446,618 to 5,447,757
wza
JDDGAC_28415: wzb - low molecular weight protein-tyrosine-phosphatase Wzb, at 5,447,763 to 5,448,206
wzb
JDDGAC_28420: wzc - tyrosine-protein kinase Wzc, at 5,448,209 to 5,450,371
wzc
Position (kb) 5446
5447
5448 Strain fitness (log2 ratio) -1
0
1
2
3 at 5445.696 kb on + strand, within yegH at 5445.697 kb on - strand, within yegH at 5445.697 kb on - strand, within yegH at 5445.697 kb on - strand, within yegH at 5445.716 kb on + strand, within yegH at 5445.870 kb on - strand at 5445.960 kb on - strand at 5445.967 kb on - strand at 5446.050 kb on - strand at 5446.069 kb on + strand at 5446.320 kb on + strand at 5446.897 kb on - strand, within wza at 5446.992 kb on + strand, within wza at 5446.992 kb on + strand, within wza at 5447.005 kb on + strand, within wza at 5447.006 kb on - strand, within wza at 5447.007 kb on + strand, within wza at 5447.107 kb on - strand, within wza at 5447.137 kb on + strand, within wza at 5447.138 kb on - strand, within wza at 5447.139 kb on + strand, within wza at 5447.158 kb on - strand, within wza at 5447.187 kb on - strand, within wza at 5447.580 kb on + strand, within wza at 5447.581 kb on - strand, within wza at 5447.632 kb on + strand, within wza at 5447.644 kb on + strand at 5447.644 kb on + strand at 5447.644 kb on + strand at 5447.644 kb on + strand at 5447.644 kb on + strand at 5447.645 kb on - strand at 5447.703 kb on + strand at 5447.704 kb on - strand at 5447.731 kb on - strand at 5448.032 kb on - strand, within wzb at 5448.144 kb on + strand, within wzb at 5448.151 kb on + strand, within wzb at 5448.152 kb on - strand, within wzb at 5448.350 kb on + strand at 5448.350 kb on + strand at 5448.374 kb on + strand at 5448.394 kb on - strand at 5448.625 kb on + strand, within wzc at 5448.745 kb on - strand, within wzc
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 5,445,696 + yegH JDDGAC_28405 0.83 +1.3 5,445,697 - yegH JDDGAC_28405 0.83 +0.2 5,445,697 - yegH JDDGAC_28405 0.83 +0.3 5,445,697 - yegH JDDGAC_28405 0.83 +0.6 5,445,716 + yegH JDDGAC_28405 0.85 -1.4 5,445,870 - +1.7 5,445,960 - -0.3 5,445,967 - +0.0 5,446,050 - +0.4 5,446,069 + -0.5 5,446,320 + +0.0 5,446,897 - wza JDDGAC_28410 0.24 +1.3 5,446,992 + wza JDDGAC_28410 0.33 +1.0 5,446,992 + wza JDDGAC_28410 0.33 +0.4 5,447,005 + wza JDDGAC_28410 0.34 -0.2 5,447,006 - wza JDDGAC_28410 0.34 +0.6 5,447,007 + wza JDDGAC_28410 0.34 -0.5 5,447,107 - wza JDDGAC_28410 0.43 -0.2 5,447,137 + wza JDDGAC_28410 0.46 -1.4 5,447,138 - wza JDDGAC_28410 0.46 -0.2 5,447,139 + wza JDDGAC_28410 0.46 +0.0 5,447,158 - wza JDDGAC_28410 0.47 +1.2 5,447,187 - wza JDDGAC_28410 0.50 -0.1 5,447,580 + wza JDDGAC_28410 0.84 -0.0 5,447,581 - wza JDDGAC_28410 0.84 +1.9 5,447,632 + wza JDDGAC_28410 0.89 +0.1 5,447,644 + -0.5 5,447,644 + -0.7 5,447,644 + +0.5 5,447,644 + +3.0 5,447,644 + +0.2 5,447,645 - -0.3 5,447,703 + +0.3 5,447,704 - +0.7 5,447,731 - +0.3 5,448,032 - wzb JDDGAC_28415 0.61 +0.5 5,448,144 + wzb JDDGAC_28415 0.86 +0.4 5,448,151 + wzb JDDGAC_28415 0.87 -0.7 5,448,152 - wzb JDDGAC_28415 0.88 +1.7 5,448,350 + +1.9 5,448,350 + +0.3 5,448,374 + +0.5 5,448,394 - +1.3 5,448,625 + wzc JDDGAC_28420 0.19 +0.4 5,448,745 - wzc JDDGAC_28420 0.25 -0.2
Or see this region's nucleotide sequence