Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and fimC are separated by 87 nucleotides fimC and yehB are separated by 15 nucleotides yehB and JDDGAC_28145 are separated by 10 nucleotides
JDDGAC_28130: fimA - Uncharacterized fimbrial-like protein YehD, at 5,391,271 to 5,391,813
fimA
JDDGAC_28135: fimC - fimbrial assembly protein, at 5,391,901 to 5,392,575
fimC
JDDGAC_28140: yehB - Outer membrane usher protein YehB, at 5,392,591 to 5,395,071
yehB
JDDGAC_28145: JDDGAC_28145 - pilus assembly protein, at 5,395,082 to 5,396,116
_28145
Position (kb) 5392
5393
5394
5395
5396 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5392.771 kb on + strand at 5392.936 kb on + strand, within yehB at 5393.055 kb on + strand, within yehB at 5393.056 kb on - strand, within yehB at 5393.065 kb on + strand, within yehB at 5393.080 kb on + strand, within yehB at 5393.089 kb on + strand, within yehB at 5393.091 kb on + strand, within yehB at 5393.120 kb on - strand, within yehB at 5393.227 kb on + strand, within yehB at 5393.277 kb on + strand, within yehB at 5393.278 kb on - strand, within yehB at 5393.404 kb on - strand, within yehB at 5393.414 kb on + strand, within yehB at 5393.521 kb on - strand, within yehB at 5393.551 kb on - strand, within yehB at 5393.554 kb on + strand, within yehB at 5393.737 kb on + strand, within yehB at 5393.775 kb on + strand, within yehB at 5393.815 kb on - strand, within yehB at 5393.973 kb on + strand, within yehB at 5393.989 kb on - strand, within yehB at 5394.106 kb on - strand, within yehB at 5394.121 kb on + strand, within yehB at 5394.164 kb on - strand, within yehB at 5394.190 kb on + strand, within yehB at 5394.190 kb on + strand, within yehB at 5394.308 kb on + strand, within yehB at 5394.308 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.311 kb on - strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.313 kb on - strand, within yehB at 5394.400 kb on - strand, within yehB at 5394.403 kb on + strand, within yehB at 5394.403 kb on + strand, within yehB at 5394.403 kb on + strand, within yehB at 5394.499 kb on + strand, within yehB at 5394.637 kb on + strand, within yehB at 5394.661 kb on - strand, within yehB at 5394.673 kb on - strand, within yehB at 5394.761 kb on + strand, within yehB at 5394.774 kb on + strand, within yehB at 5394.903 kb on + strand at 5394.948 kb on - strand at 5395.102 kb on - strand at 5396.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 5,392,771 + -2.3 5,392,936 + yehB JDDGAC_28140 0.14 -0.4 5,393,055 + yehB JDDGAC_28140 0.19 +0.8 5,393,056 - yehB JDDGAC_28140 0.19 -2.2 5,393,065 + yehB JDDGAC_28140 0.19 -1.7 5,393,080 + yehB JDDGAC_28140 0.20 +0.5 5,393,089 + yehB JDDGAC_28140 0.20 +0.3 5,393,091 + yehB JDDGAC_28140 0.20 -0.1 5,393,120 - yehB JDDGAC_28140 0.21 -1.4 5,393,227 + yehB JDDGAC_28140 0.26 -0.9 5,393,277 + yehB JDDGAC_28140 0.28 +1.2 5,393,278 - yehB JDDGAC_28140 0.28 +0.1 5,393,404 - yehB JDDGAC_28140 0.33 -0.1 5,393,414 + yehB JDDGAC_28140 0.33 +0.7 5,393,521 - yehB JDDGAC_28140 0.37 +0.7 5,393,551 - yehB JDDGAC_28140 0.39 -1.6 5,393,554 + yehB JDDGAC_28140 0.39 +0.4 5,393,737 + yehB JDDGAC_28140 0.46 -0.1 5,393,775 + yehB JDDGAC_28140 0.48 +0.6 5,393,815 - yehB JDDGAC_28140 0.49 +2.0 5,393,973 + yehB JDDGAC_28140 0.56 -0.1 5,393,989 - yehB JDDGAC_28140 0.56 -0.5 5,394,106 - yehB JDDGAC_28140 0.61 -1.4 5,394,121 + yehB JDDGAC_28140 0.62 +1.0 5,394,164 - yehB JDDGAC_28140 0.63 +0.7 5,394,190 + yehB JDDGAC_28140 0.64 -0.0 5,394,190 + yehB JDDGAC_28140 0.64 -0.9 5,394,308 + yehB JDDGAC_28140 0.69 -0.6 5,394,308 + yehB JDDGAC_28140 0.69 -0.9 5,394,310 + yehB JDDGAC_28140 0.69 -0.1 5,394,310 + yehB JDDGAC_28140 0.69 -0.4 5,394,310 + yehB JDDGAC_28140 0.69 +0.7 5,394,310 + yehB JDDGAC_28140 0.69 +0.9 5,394,311 - yehB JDDGAC_28140 0.69 -0.0 5,394,312 + yehB JDDGAC_28140 0.69 -0.7 5,394,312 + yehB JDDGAC_28140 0.69 -1.8 5,394,312 + yehB JDDGAC_28140 0.69 -0.4 5,394,312 + yehB JDDGAC_28140 0.69 -0.0 5,394,313 - yehB JDDGAC_28140 0.69 +1.4 5,394,400 - yehB JDDGAC_28140 0.73 +0.1 5,394,403 + yehB JDDGAC_28140 0.73 +1.3 5,394,403 + yehB JDDGAC_28140 0.73 +0.2 5,394,403 + yehB JDDGAC_28140 0.73 -0.1 5,394,499 + yehB JDDGAC_28140 0.77 +0.6 5,394,637 + yehB JDDGAC_28140 0.82 +0.4 5,394,661 - yehB JDDGAC_28140 0.83 -0.1 5,394,673 - yehB JDDGAC_28140 0.84 +4.1 5,394,761 + yehB JDDGAC_28140 0.87 -2.6 5,394,774 + yehB JDDGAC_28140 0.88 +1.0 5,394,903 + +0.7 5,394,948 - +0.4 5,395,102 - -0.1 5,396,023 - -0.2
Or see this region's nucleotide sequence