Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_27890 and JDDGAC_27895 are separated by 87 nucleotides JDDGAC_27895 and JDDGAC_27900 overlap by 8 nucleotides JDDGAC_27900 and JDDGAC_27905 are separated by 2 nucleotides JDDGAC_27905 and JDDGAC_27910 are separated by 12 nucleotides
JDDGAC_27890: JDDGAC_27890 - ATP-dependent Clp protease proteolytic subunit, at 5,343,837 to 5,345,861
_27890
JDDGAC_27895: JDDGAC_27895 - recombinase RecA, at 5,345,949 to 5,346,275
_27895
JDDGAC_27900: JDDGAC_27900 - DNA breaking-rejoining protein, at 5,346,268 to 5,346,549
_27900
JDDGAC_27905: JDDGAC_27905 - phage tail protein, at 5,346,552 to 5,347,175
_27905
JDDGAC_27910: JDDGAC_27910 - phage tail protein, at 5,347,188 to 5,347,586
_27910
Position (kb) 5345
5346
5347 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5344.959 kb on + strand, within JDDGAC_27890 at 5344.959 kb on + strand, within JDDGAC_27890 at 5344.959 kb on + strand, within JDDGAC_27890 at 5344.962 kb on - strand, within JDDGAC_27890 at 5345.185 kb on - strand, within JDDGAC_27890 at 5345.186 kb on + strand, within JDDGAC_27890 at 5345.187 kb on - strand, within JDDGAC_27890 at 5345.190 kb on + strand, within JDDGAC_27890 at 5345.190 kb on + strand, within JDDGAC_27890 at 5345.190 kb on + strand, within JDDGAC_27890 at 5345.191 kb on - strand, within JDDGAC_27890 at 5345.191 kb on - strand, within JDDGAC_27890 at 5345.191 kb on - strand, within JDDGAC_27890 at 5345.191 kb on - strand, within JDDGAC_27890 at 5345.236 kb on - strand, within JDDGAC_27890 at 5345.288 kb on + strand, within JDDGAC_27890 at 5345.288 kb on + strand, within JDDGAC_27890 at 5345.522 kb on + strand, within JDDGAC_27890 at 5345.748 kb on + strand at 5345.749 kb on - strand at 5345.949 kb on - strand at 5346.044 kb on + strand, within JDDGAC_27895 at 5346.162 kb on + strand, within JDDGAC_27895 at 5346.511 kb on + strand, within JDDGAC_27900 at 5346.511 kb on + strand, within JDDGAC_27900 at 5346.511 kb on + strand, within JDDGAC_27900 at 5346.512 kb on - strand, within JDDGAC_27900 at 5346.512 kb on - strand, within JDDGAC_27900 at 5346.552 kb on - strand at 5346.559 kb on + strand at 5346.559 kb on + strand at 5346.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 5,344,959 + JDDGAC_27890 0.55 -0.0 5,344,959 + JDDGAC_27890 0.55 -0.4 5,344,959 + JDDGAC_27890 0.55 -1.2 5,344,962 - JDDGAC_27890 0.56 -0.3 5,345,185 - JDDGAC_27890 0.67 -1.4 5,345,186 + JDDGAC_27890 0.67 +0.1 5,345,187 - JDDGAC_27890 0.67 +0.7 5,345,190 + JDDGAC_27890 0.67 +0.4 5,345,190 + JDDGAC_27890 0.67 +1.5 5,345,190 + JDDGAC_27890 0.67 +0.7 5,345,191 - JDDGAC_27890 0.67 +1.0 5,345,191 - JDDGAC_27890 0.67 -2.4 5,345,191 - JDDGAC_27890 0.67 +1.4 5,345,191 - JDDGAC_27890 0.67 +0.4 5,345,236 - JDDGAC_27890 0.69 -2.6 5,345,288 + JDDGAC_27890 0.72 -0.3 5,345,288 + JDDGAC_27890 0.72 +0.2 5,345,522 + JDDGAC_27890 0.83 -0.7 5,345,748 + +0.5 5,345,749 - -1.6 5,345,949 - +0.9 5,346,044 + JDDGAC_27895 0.29 -0.5 5,346,162 + JDDGAC_27895 0.65 -0.2 5,346,511 + JDDGAC_27900 0.86 +1.1 5,346,511 + JDDGAC_27900 0.86 -0.5 5,346,511 + JDDGAC_27900 0.86 +1.1 5,346,512 - JDDGAC_27900 0.87 +0.3 5,346,512 - JDDGAC_27900 0.87 -0.1 5,346,552 - +1.0 5,346,559 + -3.0 5,346,559 + +0.9 5,346,560 - +0.9
Or see this region's nucleotide sequence