Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alaA and lrhA are separated by 919 nucleotides lrhA and JDDGAC_26800 are separated by 203 nucleotides JDDGAC_26800 and nuoA are separated by 262 nucleotides
JDDGAC_26790: alaA - alanine transaminase AlaA, at 5,127,322 to 5,128,539
alaA
JDDGAC_26795: lrhA - transcriptional regulator LrhA, at 5,129,459 to 5,130,397
lrhA
JDDGAC_26800: JDDGAC_26800 - hypothetical protein, at 5,130,601 to 5,130,765
_26800
JDDGAC_26805: nuoA - NADH-quinone oxidoreductase subunit NuoA, at 5,131,028 to 5,131,471
nuoA
Position (kb) 5129
5130
5131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5128.592 kb on + strand at 5128.602 kb on + strand at 5128.602 kb on + strand at 5128.785 kb on - strand at 5128.945 kb on - strand at 5128.996 kb on - strand at 5129.017 kb on + strand at 5129.022 kb on + strand at 5129.023 kb on - strand at 5129.089 kb on + strand at 5129.090 kb on - strand at 5129.136 kb on + strand at 5129.137 kb on - strand at 5129.219 kb on + strand at 5129.223 kb on + strand at 5129.243 kb on - strand at 5129.245 kb on + strand at 5129.249 kb on + strand at 5129.267 kb on - strand at 5129.292 kb on + strand at 5129.332 kb on + strand at 5129.385 kb on + strand at 5129.446 kb on + strand at 5129.453 kb on + strand at 5129.453 kb on + strand at 5129.454 kb on - strand at 5129.454 kb on - strand at 5129.457 kb on - strand at 5129.457 kb on - strand at 5129.459 kb on - strand at 5129.463 kb on + strand at 5129.486 kb on - strand at 5129.486 kb on - strand at 5129.710 kb on + strand, within lrhA at 5129.760 kb on + strand, within lrhA at 5129.760 kb on + strand, within lrhA at 5129.800 kb on - strand, within lrhA at 5129.866 kb on + strand, within lrhA at 5129.873 kb on + strand, within lrhA at 5129.873 kb on + strand, within lrhA at 5129.873 kb on + strand, within lrhA at 5129.873 kb on + strand, within lrhA at 5129.873 kb on + strand, within lrhA at 5129.873 kb on + strand, within lrhA at 5129.873 kb on + strand, within lrhA at 5129.874 kb on - strand, within lrhA at 5129.874 kb on - strand, within lrhA at 5129.959 kb on + strand, within lrhA at 5129.960 kb on - strand, within lrhA at 5129.993 kb on + strand, within lrhA at 5129.993 kb on + strand, within lrhA at 5129.993 kb on + strand, within lrhA at 5130.027 kb on + strand, within lrhA at 5130.028 kb on - strand, within lrhA at 5130.028 kb on - strand, within lrhA at 5130.080 kb on - strand, within lrhA at 5130.080 kb on - strand, within lrhA at 5130.088 kb on + strand, within lrhA at 5130.107 kb on + strand, within lrhA at 5130.108 kb on - strand, within lrhA at 5130.217 kb on - strand, within lrhA at 5130.261 kb on - strand, within lrhA at 5130.277 kb on + strand, within lrhA at 5130.299 kb on + strand, within lrhA at 5130.300 kb on - strand, within lrhA at 5130.318 kb on - strand at 5130.318 kb on - strand at 5130.322 kb on + strand at 5130.335 kb on + strand at 5130.336 kb on - strand at 5130.410 kb on - strand at 5130.566 kb on + strand at 5130.592 kb on - strand at 5130.672 kb on + strand, within JDDGAC_26800 at 5130.673 kb on - strand, within JDDGAC_26800 at 5130.767 kb on + strand at 5130.768 kb on - strand at 5130.768 kb on - strand at 5130.768 kb on - strand at 5130.768 kb on - strand at 5130.809 kb on + strand at 5130.809 kb on + strand at 5130.810 kb on - strand at 5130.914 kb on + strand at 5131.023 kb on - strand at 5131.034 kb on - strand at 5131.079 kb on - strand, within nuoA at 5131.278 kb on - strand, within nuoA at 5131.278 kb on - strand, within nuoA at 5131.320 kb on + strand, within nuoA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 5,128,592 + +1.0 5,128,602 + -1.2 5,128,602 + +1.1 5,128,785 - -0.8 5,128,945 - +0.7 5,128,996 - +0.7 5,129,017 + -1.1 5,129,022 + -0.7 5,129,023 - -0.3 5,129,089 + +0.8 5,129,090 - -2.0 5,129,136 + -0.5 5,129,137 - -0.0 5,129,219 + +1.0 5,129,223 + +0.9 5,129,243 - -0.2 5,129,245 + +0.5 5,129,249 + +0.6 5,129,267 - +0.4 5,129,292 + -0.2 5,129,332 + -3.7 5,129,385 + -0.3 5,129,446 + -2.3 5,129,453 + -1.8 5,129,453 + -0.3 5,129,454 - +0.1 5,129,454 - +0.2 5,129,457 - -1.0 5,129,457 - -0.2 5,129,459 - +0.3 5,129,463 + -1.2 5,129,486 - -0.7 5,129,486 - +0.6 5,129,710 + lrhA JDDGAC_26795 0.27 -2.4 5,129,760 + lrhA JDDGAC_26795 0.32 -1.7 5,129,760 + lrhA JDDGAC_26795 0.32 -0.0 5,129,800 - lrhA JDDGAC_26795 0.36 +0.6 5,129,866 + lrhA JDDGAC_26795 0.43 -0.3 5,129,873 + lrhA JDDGAC_26795 0.44 -0.6 5,129,873 + lrhA JDDGAC_26795 0.44 +1.5 5,129,873 + lrhA JDDGAC_26795 0.44 +0.1 5,129,873 + lrhA JDDGAC_26795 0.44 +0.0 5,129,873 + lrhA JDDGAC_26795 0.44 +1.4 5,129,873 + lrhA JDDGAC_26795 0.44 +0.7 5,129,873 + lrhA JDDGAC_26795 0.44 -0.2 5,129,874 - lrhA JDDGAC_26795 0.44 +0.7 5,129,874 - lrhA JDDGAC_26795 0.44 +0.6 5,129,959 + lrhA JDDGAC_26795 0.53 +1.6 5,129,960 - lrhA JDDGAC_26795 0.53 -0.8 5,129,993 + lrhA JDDGAC_26795 0.57 -1.1 5,129,993 + lrhA JDDGAC_26795 0.57 +0.5 5,129,993 + lrhA JDDGAC_26795 0.57 +0.7 5,130,027 + lrhA JDDGAC_26795 0.60 +0.6 5,130,028 - lrhA JDDGAC_26795 0.61 -1.8 5,130,028 - lrhA JDDGAC_26795 0.61 +0.1 5,130,080 - lrhA JDDGAC_26795 0.66 -0.3 5,130,080 - lrhA JDDGAC_26795 0.66 +1.0 5,130,088 + lrhA JDDGAC_26795 0.67 +0.5 5,130,107 + lrhA JDDGAC_26795 0.69 +1.1 5,130,108 - lrhA JDDGAC_26795 0.69 +0.9 5,130,217 - lrhA JDDGAC_26795 0.81 -0.8 5,130,261 - lrhA JDDGAC_26795 0.85 -0.2 5,130,277 + lrhA JDDGAC_26795 0.87 -0.6 5,130,299 + lrhA JDDGAC_26795 0.89 -0.5 5,130,300 - lrhA JDDGAC_26795 0.90 +2.8 5,130,318 - -1.0 5,130,318 - +0.7 5,130,322 + -0.8 5,130,335 + -2.3 5,130,336 - -0.9 5,130,410 - +0.8 5,130,566 + -0.5 5,130,592 - +0.4 5,130,672 + JDDGAC_26800 0.43 -1.6 5,130,673 - JDDGAC_26800 0.44 +0.3 5,130,767 + -0.9 5,130,768 - +1.4 5,130,768 - +0.0 5,130,768 - +1.3 5,130,768 - -0.9 5,130,809 + -0.1 5,130,809 + +0.5 5,130,810 - -0.2 5,130,914 + +0.9 5,131,023 - +1.6 5,131,034 - +1.1 5,131,079 - nuoA JDDGAC_26805 0.11 -1.0 5,131,278 - nuoA JDDGAC_26805 0.56 +1.4 5,131,278 - nuoA JDDGAC_26805 0.56 -0.3 5,131,320 + nuoA JDDGAC_26805 0.66 +0.9
Or see this region's nucleotide sequence