Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tdcD and tdcE are separated by 33 nucleotides tdcE and tdcF are separated by 13 nucleotides tdcF and tdcG are separated by 71 nucleotides
JDDGAC_22045: tdcD - propionate kinase, at 4,214,682 to 4,215,890
tdcD
JDDGAC_22050: tdcE - 2-ketobutyrate formate-lyase/pyruvate formate-lyase, at 4,215,924 to 4,218,218
tdcE
JDDGAC_22055: tdcF - enamine/imine deaminase, at 4,218,232 to 4,218,621
tdcF
JDDGAC_22060: tdcG - L-serine ammonia-lyase, at 4,218,693 to 4,220,057
tdcG
Position (kb) 4215
4216
4217
4218
4219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4215.145 kb on - strand, within tdcD at 4215.196 kb on - strand, within tdcD at 4215.488 kb on - strand, within tdcD at 4215.491 kb on - strand, within tdcD at 4215.494 kb on + strand, within tdcD at 4215.908 kb on - strand at 4216.031 kb on + strand at 4216.031 kb on + strand at 4216.032 kb on - strand at 4216.032 kb on - strand at 4216.035 kb on + strand at 4216.035 kb on + strand at 4216.036 kb on - strand at 4216.038 kb on - strand at 4216.044 kb on + strand at 4216.044 kb on + strand at 4216.124 kb on + strand at 4216.167 kb on - strand, within tdcE at 4216.181 kb on + strand, within tdcE at 4216.200 kb on + strand, within tdcE at 4216.202 kb on + strand, within tdcE at 4216.203 kb on - strand, within tdcE at 4216.203 kb on - strand, within tdcE at 4216.283 kb on + strand, within tdcE at 4216.283 kb on + strand, within tdcE at 4216.283 kb on + strand, within tdcE at 4216.286 kb on + strand, within tdcE at 4216.286 kb on + strand, within tdcE at 4216.287 kb on - strand, within tdcE at 4216.292 kb on + strand, within tdcE at 4216.292 kb on + strand, within tdcE at 4216.292 kb on + strand, within tdcE at 4216.311 kb on + strand, within tdcE at 4216.312 kb on - strand, within tdcE at 4216.381 kb on + strand, within tdcE at 4216.382 kb on - strand, within tdcE at 4216.393 kb on - strand, within tdcE at 4216.393 kb on - strand, within tdcE at 4216.442 kb on - strand, within tdcE at 4216.480 kb on - strand, within tdcE at 4216.497 kb on + strand, within tdcE at 4216.498 kb on - strand, within tdcE at 4216.509 kb on + strand, within tdcE at 4216.510 kb on - strand, within tdcE at 4216.657 kb on - strand, within tdcE at 4216.668 kb on - strand, within tdcE at 4216.722 kb on + strand, within tdcE at 4216.723 kb on - strand, within tdcE at 4216.794 kb on + strand, within tdcE at 4216.794 kb on + strand, within tdcE at 4216.795 kb on - strand, within tdcE at 4216.795 kb on - strand, within tdcE at 4216.795 kb on - strand, within tdcE at 4216.795 kb on - strand, within tdcE at 4216.823 kb on - strand, within tdcE at 4216.877 kb on + strand, within tdcE at 4216.976 kb on + strand, within tdcE at 4217.024 kb on + strand, within tdcE at 4217.157 kb on - strand, within tdcE at 4217.217 kb on - strand, within tdcE at 4217.268 kb on + strand, within tdcE at 4217.268 kb on + strand, within tdcE at 4217.353 kb on - strand, within tdcE at 4217.406 kb on + strand, within tdcE at 4217.407 kb on - strand, within tdcE at 4217.434 kb on - strand, within tdcE at 4217.448 kb on + strand, within tdcE at 4217.448 kb on + strand, within tdcE at 4217.702 kb on + strand, within tdcE at 4217.762 kb on + strand, within tdcE at 4217.931 kb on + strand, within tdcE at 4217.931 kb on + strand, within tdcE at 4217.932 kb on - strand, within tdcE at 4217.981 kb on + strand, within tdcE at 4217.981 kb on + strand, within tdcE at 4218.012 kb on + strand at 4218.065 kb on - strand at 4218.188 kb on + strand at 4218.189 kb on - strand at 4218.197 kb on + strand at 4218.231 kb on + strand at 4218.231 kb on + strand at 4218.232 kb on - strand at 4218.280 kb on + strand, within tdcF at 4218.280 kb on + strand, within tdcF at 4218.281 kb on - strand, within tdcF at 4218.281 kb on - strand, within tdcF at 4218.300 kb on - strand, within tdcF at 4218.387 kb on - strand, within tdcF at 4218.502 kb on + strand, within tdcF at 4218.504 kb on + strand, within tdcF at 4218.505 kb on - strand, within tdcF at 4218.505 kb on - strand, within tdcF at 4218.554 kb on + strand, within tdcF at 4218.554 kb on + strand, within tdcF at 4218.554 kb on + strand, within tdcF at 4218.555 kb on - strand, within tdcF at 4218.612 kb on + strand at 4218.612 kb on + strand at 4218.612 kb on + strand at 4218.613 kb on - strand at 4218.644 kb on + strand at 4218.645 kb on - strand at 4218.645 kb on - strand at 4218.645 kb on - strand at 4218.692 kb on + strand at 4218.779 kb on + strand at 4218.779 kb on + strand at 4218.805 kb on + strand at 4218.824 kb on + strand at 4218.825 kb on - strand at 4218.958 kb on + strand, within tdcG at 4218.958 kb on + strand, within tdcG at 4218.958 kb on + strand, within tdcG at 4218.959 kb on - strand, within tdcG at 4218.959 kb on - strand, within tdcG at 4218.959 kb on - strand, within tdcG at 4218.959 kb on - strand, within tdcG at 4219.002 kb on - strand, within tdcG at 4219.032 kb on - strand, within tdcG at 4219.105 kb on + strand, within tdcG at 4219.106 kb on - strand, within tdcG at 4219.106 kb on - strand, within tdcG at 4219.108 kb on + strand, within tdcG at 4219.113 kb on - strand, within tdcG at 4219.119 kb on + strand, within tdcG at 4219.119 kb on + strand, within tdcG at 4219.119 kb on + strand, within tdcG at 4219.119 kb on + strand, within tdcG at 4219.120 kb on - strand, within tdcG at 4219.122 kb on + strand, within tdcG
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 4,215,145 - tdcD JDDGAC_22045 0.38 +0.6 4,215,196 - tdcD JDDGAC_22045 0.43 +1.9 4,215,488 - tdcD JDDGAC_22045 0.67 +0.5 4,215,491 - tdcD JDDGAC_22045 0.67 +0.8 4,215,494 + tdcD JDDGAC_22045 0.67 -0.4 4,215,908 - -0.3 4,216,031 + -1.0 4,216,031 + +1.1 4,216,032 - -0.2 4,216,032 - +1.5 4,216,035 + +0.0 4,216,035 + -0.8 4,216,036 - +1.3 4,216,038 - +0.0 4,216,044 + -0.9 4,216,044 + +1.0 4,216,124 + -0.6 4,216,167 - tdcE JDDGAC_22050 0.11 +0.4 4,216,181 + tdcE JDDGAC_22050 0.11 +0.4 4,216,200 + tdcE JDDGAC_22050 0.12 -0.7 4,216,202 + tdcE JDDGAC_22050 0.12 +1.3 4,216,203 - tdcE JDDGAC_22050 0.12 -0.0 4,216,203 - tdcE JDDGAC_22050 0.12 +0.9 4,216,283 + tdcE JDDGAC_22050 0.16 -0.3 4,216,283 + tdcE JDDGAC_22050 0.16 +0.9 4,216,283 + tdcE JDDGAC_22050 0.16 +0.1 4,216,286 + tdcE JDDGAC_22050 0.16 -1.7 4,216,286 + tdcE JDDGAC_22050 0.16 +0.8 4,216,287 - tdcE JDDGAC_22050 0.16 -1.1 4,216,292 + tdcE JDDGAC_22050 0.16 +0.4 4,216,292 + tdcE JDDGAC_22050 0.16 +0.7 4,216,292 + tdcE JDDGAC_22050 0.16 -0.3 4,216,311 + tdcE JDDGAC_22050 0.17 +0.4 4,216,312 - tdcE JDDGAC_22050 0.17 +0.1 4,216,381 + tdcE JDDGAC_22050 0.20 +0.6 4,216,382 - tdcE JDDGAC_22050 0.20 -1.0 4,216,393 - tdcE JDDGAC_22050 0.20 -1.7 4,216,393 - tdcE JDDGAC_22050 0.20 +0.7 4,216,442 - tdcE JDDGAC_22050 0.23 +0.9 4,216,480 - tdcE JDDGAC_22050 0.24 -2.9 4,216,497 + tdcE JDDGAC_22050 0.25 +0.4 4,216,498 - tdcE JDDGAC_22050 0.25 -1.3 4,216,509 + tdcE JDDGAC_22050 0.25 +0.1 4,216,510 - tdcE JDDGAC_22050 0.26 -0.3 4,216,657 - tdcE JDDGAC_22050 0.32 +1.5 4,216,668 - tdcE JDDGAC_22050 0.32 -0.3 4,216,722 + tdcE JDDGAC_22050 0.35 -1.3 4,216,723 - tdcE JDDGAC_22050 0.35 -0.1 4,216,794 + tdcE JDDGAC_22050 0.38 -0.4 4,216,794 + tdcE JDDGAC_22050 0.38 -1.3 4,216,795 - tdcE JDDGAC_22050 0.38 +1.2 4,216,795 - tdcE JDDGAC_22050 0.38 +0.1 4,216,795 - tdcE JDDGAC_22050 0.38 -0.2 4,216,795 - tdcE JDDGAC_22050 0.38 -0.6 4,216,823 - tdcE JDDGAC_22050 0.39 -1.4 4,216,877 + tdcE JDDGAC_22050 0.42 +0.3 4,216,976 + tdcE JDDGAC_22050 0.46 -0.2 4,217,024 + tdcE JDDGAC_22050 0.48 -0.3 4,217,157 - tdcE JDDGAC_22050 0.54 +0.5 4,217,217 - tdcE JDDGAC_22050 0.56 +0.7 4,217,268 + tdcE JDDGAC_22050 0.59 +1.4 4,217,268 + tdcE JDDGAC_22050 0.59 -1.3 4,217,353 - tdcE JDDGAC_22050 0.62 +0.3 4,217,406 + tdcE JDDGAC_22050 0.65 -0.0 4,217,407 - tdcE JDDGAC_22050 0.65 +0.5 4,217,434 - tdcE JDDGAC_22050 0.66 +0.4 4,217,448 + tdcE JDDGAC_22050 0.66 +0.1 4,217,448 + tdcE JDDGAC_22050 0.66 -0.4 4,217,702 + tdcE JDDGAC_22050 0.77 +0.6 4,217,762 + tdcE JDDGAC_22050 0.80 -0.2 4,217,931 + tdcE JDDGAC_22050 0.87 -1.3 4,217,931 + tdcE JDDGAC_22050 0.87 +0.7 4,217,932 - tdcE JDDGAC_22050 0.87 +0.2 4,217,981 + tdcE JDDGAC_22050 0.90 -0.5 4,217,981 + tdcE JDDGAC_22050 0.90 +0.6 4,218,012 + -0.5 4,218,065 - -0.3 4,218,188 + +1.6 4,218,189 - -0.7 4,218,197 + +0.4 4,218,231 + +0.2 4,218,231 + -1.2 4,218,232 - +0.8 4,218,280 + tdcF JDDGAC_22055 0.12 -2.3 4,218,280 + tdcF JDDGAC_22055 0.12 -1.1 4,218,281 - tdcF JDDGAC_22055 0.13 -1.2 4,218,281 - tdcF JDDGAC_22055 0.13 +1.2 4,218,300 - tdcF JDDGAC_22055 0.17 -1.3 4,218,387 - tdcF JDDGAC_22055 0.40 -0.0 4,218,502 + tdcF JDDGAC_22055 0.69 +0.5 4,218,504 + tdcF JDDGAC_22055 0.70 -0.3 4,218,505 - tdcF JDDGAC_22055 0.70 +0.8 4,218,505 - tdcF JDDGAC_22055 0.70 -0.1 4,218,554 + tdcF JDDGAC_22055 0.83 +0.9 4,218,554 + tdcF JDDGAC_22055 0.83 +0.2 4,218,554 + tdcF JDDGAC_22055 0.83 -1.9 4,218,555 - tdcF JDDGAC_22055 0.83 +0.1 4,218,612 + +0.2 4,218,612 + +0.3 4,218,612 + -0.3 4,218,613 - +0.6 4,218,644 + -1.1 4,218,645 - +0.4 4,218,645 - -0.3 4,218,645 - +0.9 4,218,692 + -0.9 4,218,779 + -1.6 4,218,779 + -0.3 4,218,805 + +1.1 4,218,824 + -0.8 4,218,825 - -0.6 4,218,958 + tdcG JDDGAC_22060 0.19 +0.2 4,218,958 + tdcG JDDGAC_22060 0.19 -0.6 4,218,958 + tdcG JDDGAC_22060 0.19 +0.3 4,218,959 - tdcG JDDGAC_22060 0.19 +0.8 4,218,959 - tdcG JDDGAC_22060 0.19 +0.3 4,218,959 - tdcG JDDGAC_22060 0.19 +0.2 4,218,959 - tdcG JDDGAC_22060 0.19 +0.7 4,219,002 - tdcG JDDGAC_22060 0.23 +0.3 4,219,032 - tdcG JDDGAC_22060 0.25 +0.2 4,219,105 + tdcG JDDGAC_22060 0.30 +1.1 4,219,106 - tdcG JDDGAC_22060 0.30 -0.2 4,219,106 - tdcG JDDGAC_22060 0.30 +0.6 4,219,108 + tdcG JDDGAC_22060 0.30 +0.2 4,219,113 - tdcG JDDGAC_22060 0.31 +0.0 4,219,119 + tdcG JDDGAC_22060 0.31 +1.3 4,219,119 + tdcG JDDGAC_22060 0.31 +0.0 4,219,119 + tdcG JDDGAC_22060 0.31 -0.4 4,219,119 + tdcG JDDGAC_22060 0.31 -0.1 4,219,120 - tdcG JDDGAC_22060 0.31 -0.6 4,219,122 + tdcG JDDGAC_22060 0.31 +1.8
Or see this region's nucleotide sequence