Experiment: WM_JK45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_09140 and JDDGAC_09145 are separated by 144 nucleotides JDDGAC_09145 and JDDGAC_09150 are separated by 56 nucleotides JDDGAC_09150 and JDDGAC_09155 are separated by 12 nucleotides
JDDGAC_09140: JDDGAC_09140 - putative tape measure protein, at 1,615,501 to 1,617,948
_09140
JDDGAC_09145: JDDGAC_09145 - Phage tail assembly chaperone proteins, E, or 41 or 14, at 1,618,093 to 1,618,368
_09145
JDDGAC_09150: JDDGAC_09150 - Tail tube protein, at 1,618,425 to 1,618,943
_09150
JDDGAC_09155: JDDGAC_09155 - phage tail protein, at 1,618,956 to 1,620,146
_09155
Position (kb)
1618
1619 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1617.167 kb on - strand, within JDDGAC_09140 at 1617.236 kb on - strand, within JDDGAC_09140 at 1617.380 kb on - strand, within JDDGAC_09140 at 1617.391 kb on - strand, within JDDGAC_09140 at 1617.419 kb on + strand, within JDDGAC_09140 at 1617.438 kb on + strand, within JDDGAC_09140 at 1617.438 kb on + strand, within JDDGAC_09140 at 1617.490 kb on - strand, within JDDGAC_09140 at 1617.555 kb on + strand, within JDDGAC_09140 at 1617.558 kb on + strand, within JDDGAC_09140 at 1617.558 kb on + strand, within JDDGAC_09140 at 1617.559 kb on - strand, within JDDGAC_09140 at 1617.616 kb on - strand, within JDDGAC_09140 at 1617.618 kb on - strand, within JDDGAC_09140 at 1617.873 kb on + strand at 1617.923 kb on - strand at 1617.929 kb on - strand at 1617.942 kb on + strand at 1617.943 kb on - strand at 1618.014 kb on + strand at 1618.218 kb on + strand, within JDDGAC_09145 at 1618.540 kb on + strand, within JDDGAC_09150 at 1618.541 kb on - strand, within JDDGAC_09150 at 1618.541 kb on - strand, within JDDGAC_09150 at 1618.541 kb on - strand, within JDDGAC_09150 at 1618.549 kb on - strand, within JDDGAC_09150 at 1618.731 kb on - strand, within JDDGAC_09150 at 1618.888 kb on + strand, within JDDGAC_09150 at 1618.993 kb on + strand at 1618.993 kb on + strand at 1618.993 kb on + strand at 1619.048 kb on + strand at 1619.048 kb on + strand at 1619.050 kb on + strand at 1619.171 kb on + strand, within JDDGAC_09155
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK45 remove 1,617,167 - JDDGAC_09140 0.68 +1.9 1,617,236 - JDDGAC_09140 0.71 +2.8 1,617,380 - JDDGAC_09140 0.77 +1.6 1,617,391 - JDDGAC_09140 0.77 +1.6 1,617,419 + JDDGAC_09140 0.78 +1.7 1,617,438 + JDDGAC_09140 0.79 +1.6 1,617,438 + JDDGAC_09140 0.79 +1.3 1,617,490 - JDDGAC_09140 0.81 +2.2 1,617,555 + JDDGAC_09140 0.84 +2.2 1,617,558 + JDDGAC_09140 0.84 +0.4 1,617,558 + JDDGAC_09140 0.84 -2.5 1,617,559 - JDDGAC_09140 0.84 +1.6 1,617,616 - JDDGAC_09140 0.86 +1.9 1,617,618 - JDDGAC_09140 0.86 +1.7 1,617,873 + +2.0 1,617,923 - +1.5 1,617,929 - +1.3 1,617,942 + +0.6 1,617,943 - +1.3 1,618,014 + +1.1 1,618,218 + JDDGAC_09145 0.45 +2.0 1,618,540 + JDDGAC_09150 0.22 +1.7 1,618,541 - JDDGAC_09150 0.22 +1.0 1,618,541 - JDDGAC_09150 0.22 +1.2 1,618,541 - JDDGAC_09150 0.22 +1.0 1,618,549 - JDDGAC_09150 0.24 +1.7 1,618,731 - JDDGAC_09150 0.59 +0.8 1,618,888 + JDDGAC_09150 0.89 +2.2 1,618,993 + +1.5 1,618,993 + +2.0 1,618,993 + +2.2 1,619,048 + +2.8 1,619,048 + +1.6 1,619,050 + +0.2 1,619,171 + JDDGAC_09155 0.18 +0.8
Or see this region's nucleotide sequence